HsaEX0026573 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130632202-130636126:+
Coord C1 exon
chr9:130632202-130632278
Coord A exon
chr9:130634667-130634738
Coord C2 exon
chr9:130635999-130636126
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGTTCTTCGCACAGGCC
3' ss Score
9.28
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTCCCAA
Seq A exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCAACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGA
Seq C2 exon
GTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164_MULTIEX1-8/8=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.880 C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000319725fB16006
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCGGCCTTTCTGACC
R:
CGTCTGTCCGTAGAAAGCGAC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development