GgaEX1025680 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5942360-5946701:+
Coord C1 exon
chr17:5942360-5942436
Coord A exon
chr17:5946020-5946091
Coord C2 exon
chr17:5946574-5946701
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTATTGTCATCTTTGCACAGGCC
3' ss Score
7.97
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGTCCTCAGGCGTTCATGACGCAGGGTTGGGGCAGTACCTACCAGACGTGGCAGCAGCCTGGACAGCAAGTCCCAA
Seq A exon
GCCAACAGAGCCAGCAGCAGAACAGCCATCCCGATTACAGCAAAGCATGGGAGGAATATTACAAAAAACAGA
Seq C2 exon
GTCATGCTGCCAGCGCTGCTTCTCAGGCGAGCTCCCAGCCGGACTACACGATGGCCTGGGCAGAGTATTACAGACAGCAGGCTGCCTACTACGGGCAGACACTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX2-4/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.880 C2=0.416
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(66.7=88.0)
C2:
PF090055=DUF1897=PD(30.3=23.3),PF090055=DUF1897=WD(100=76.7)
Main Inclusion Isoform:
ENSGALT00000039554fB7720
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCAGGCGTTCATGAC
R:
CCCTAGTGTCTGCCCGTAGTA
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]