GgaINT0124197 @ galGal4
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5942360-5946701:+
Coord C1 exon
chr17:5942360-5942436
Coord A exon
chr17:5942437-5946573
Coord C2 exon
chr17:5946574-5946701
Length
4137 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCCCCTTCTCTTTTCTCCAGGTC
3' ss Score
13.36
Exon sequences
Seq C1 exon
TGGTCCTCAGGCGTTCATGACGCAGGGTTGGGGCAGTACCTACCAGACGTGGCAGCAGCCTGGACAGCAAGTCCCAA
Seq A exon
GTAAGTGTTTAGGGCCTGGGTTTGAGAAAGATTGGTGTTCTCTTTGCCACTAGACACAGATTGATCCATAAGACCACCTGTGTGAGGTGGTGTTAAAGCTTGGAATAAGCTGAAGTCCACCGGAACCAGTAACGCTTTTTGTGCACTTAACTGCTTGTTTCTGCTCCCTTTGTGTAGAAACCCACTTTGTAACATTTCTGCCTTAAGCTTTCTCTTGTGAGGATTCTCCAGACAAGCACTTGCTATCCCCACTTCTCCCTGACATGCACACCATGTCTGGTGGTGAGCCCTCCCATCTGCCTGCTTTTTAACTCATCAGTTCTTGATAATTATTTTTTTATACATGTTCTTTATGAGCTCTTCTCTAATTCCCACACTGATGGAAAGACTGGGAAATAGATGCAGAAAATGGAGATGTGTGGCTCCTATCCTGCTTCATTCATGCTGGCTGTAGTAGTGTCCTCTTATTTCCTTTTGGGAGCTGATAACTGCTTAGCTTCTGCAGCACTAAAAGCATGGAATGTGACCAGCCAGATATTAGCATTAAGATAAAAGTGGCAGTGCACAAATATCTTCAGTAATGAGTTCAAAAGCTGAACCCAGATCACTTCTGCTACTGATCTTAATGCTTTGGGCCACTGACACAGTGAATCAAACTGGCTGTTGTTCTTCAGGGCTCAAAGTGTCCACTTTCTCACAGAACTGTTCAAAATTCATCAGGTTGGAATGAGAGGTTCCCCATTTCAGAATAACTGAAGTAGTGCTGTAGTGGTGATGTTGGTAATGGCATTATCCTGTCTTCAACAACCTGAATGATGCTTTGAGCAGATTCCTTGCCTACTTGTTAATCTCAGAGCTCATGTGACAGACTGAGGTGCCTTCCAGTGCTCTGACTGCTTCAGCAATGAAGTAGGTGGTTAAGTTCAGTTTAAATTCCCTCTCTTTGAGGTGCCTGAGATGGGAGAATAATTGGTGTAACAGTGCAAGCAACTGCATTTGTGACTCCCTGTGACACAGATGACATTTCATGTAAATGAAATTGTGCATATCTGAAATCTGAAAATCCTCAACACTGTGCTTTTGACACTGTGCACTTCTGGAAACCCTGCATGGGACTGGGGGCTTTGTGTTAAACTTTGAGAAAGTGGATTTGGAAGAGGGCTTCTACTCCTCAGAAATGGCTGTTTAAAAATCGTAGCTCTTCTGTAGAGCTCTGGAGACAGGCAGAAAATCAGCAGCAGCTGTGCTTTCAGGATAGGTGGGCTTGGAAAGAATTTTTGTTTGTACAGGAGTGGAATAGTGTGATGCTGAAAAGGAGAATTTTCCCACTAGCTTGTTTTAGAGGAAAAATTACTGCTCACATCCTTTCTTGTGCTCTCCCAAGAGCACTGAACCTTCCTGAGAAGCAAAGCAAGAAGTGCAGCAGGGAAAGCTCTACAGAAAAAAGCCGTAACTTTCAGCTTCACATAAAGCTTTTGAATAAATGCTTATGAAATATGCTTTTCTAATTGCCTTCAGAGACTCCTTTAGAAACTCACCTTGCAAATTTGTCTTCTTCCTTGCCTTCCTCAGGTGTCCTCCTGCCTCCCCATCAGACACTGGGGGAAAATAATCTCTCTTTCTGTAATGTCTGTGAGCCGTGTCTTGTGCTCACAGCCCTTGGCCTTGGAGCTCAGTGGTGTCAGAAATCCAGACCCCTTGAATTTCCCAGTACCAGCAGTGTGGCTTGTCCCACTGGCAGCTGCTTTGCAGTGCATCTGTGAGGTTTCTGGTGGCTCCCAGAACCCGTGAAGCATGCTGCCTTGCGGTGATGGTTCCCCTGCATGGGATTAGTACCACAAAGATGTGTTCTGGGGACAAATATTTAATCTCTGCTGTTGAACATGATGGAAAATGTCAGTTAATAGTTTCATGTCTACTTAGGGTCCTCCATATTCCTGTTTGTAGGCAGGCACACTGAAGGCAGTCTTGGTAAGAAGAGAGGACAGACGAGATAATGCCATGCTTTAAGCAGACCTCACTGCTTTCTTTTCCTGCTGCAGATCACAATGGTACCCAGTCAGGCCAGGTGGAGTTCACCAAGGCATGGGAGGATTATTATAGGAAACTAGGTAAATACCTGTTTTTACACTGTGAGTTTTAATTTGAGAACAGTCTGGCGAAGGGGCCCTGCCCTGTGGCTCTGCTTCCCCCAGCAGACCTGTCCCCTGACTCCCAGGGACAGATCCCAGAGTGCCCTCCTTGTGGGAGGAGGGGCAGCCCCCACCCCTACACATGTATTCAGATTTTAATTACTTCCCCCATCTTAAATAAATTAACTGGCCAGAGAAACATTTTGCCGTGAAATGCATTTAGCTGCGTGTCCTTTCAGCCCGCTGCGGACTTTAATTCTCCGAGAAGAAAAGGCATTGAAGGAGGTCCTTTGTTGGCATTAGCAGGTGGACAGTTGAGGCAGCCTTGACCTCTGCCAGTAAAGGTCCTGACTTGTAGCATCGGTCAAGTCTTTTAACCTGCTTTTATGCCCCTGGACAGGACACTGCTGCCCTGTTCCCTCCACCCACTTCACACTCGCAGTGCATTACGTTCCCCCTCTCCCCCCACTTCAGAGCCCTCTGAGATGAAGCCGAGGCGCTCGGATGGGCTGCGAGAGCTCCTGTGTGTGCGTGCTGTCCTTGCCTGCTGTGCGTGCAGCAGCTTGTGCTTTCGCCATGCCTGCCTTCCTCTGCAGCTTTCTGATTGCTGTATTTTCTTTCAGGGTTGGTTGGTTTGTTTACTGCATGTCTGGCTGAGGGCTCTTTGCTCTAACTGTGGCCTCTGCAGCCAGCAGGTTGGACTCACCCCTGCAACAACACGTAGACACACTGGCTTCAATACGTCTTAGCGTTTGAAGGAGGAAGATTAGTACTAGGTGCAGGCAGGCTCTGGGCTCTGTGGTCTATCCGTATGGCTCTTAGTGTAGTGCAGGAGCCCGGAGCCAGCCCTGCAGAGCCGGCCGTGCCTGTTTAGAAGGCTTCACAGGTGCTGCTGCATGGGGCGGTGTTGGGGCACACTTGCTGTGTGCTGACCACATTGTATGGGCAGGCATTGTCACCAGGACTCCTTGGGATGTGTCCTGCTGCAAGAGCATGGGGTGCAGACTGCAGGTGACTGCAGATGTGGTTGTATCCGTGGCAGCTGTGTGGCTGGAGGTTGAGGTGATAGGGCTCTGTTGTCAGGGTTTGAGCCCTGGGTCCCTGTACTCGGTGTGAGTGGGCTGACAGCCTCAGGTCGTTGATGTGCAGACCTAGCAGCTCCCAACAGCGTGCTTGGCCTTGGGCAAGTCCTGACAGAGTGGAGGGGAGGGATGGAATTTGGCTTCATGCCCTTCAGCAGCACTCAGGTGAGACAGAATCGGGAACTTGAGCCTTTCCTTGGCATTCCACAAATGGACAATGCCCAACACTGCAGAAATGTGGAAGCTGAAGCATGGAGTCCGGGCAACTGAGGTTAGAGCCAGGGCTGTCCAGTGGAGAGGTAGATGTCACTAGCTGGAAACTGTCACCTGTTCCATATTGACATGCCCCTTATTGTCATCTTTGCACAGGCCAACAGAGCCAGCAGCAGAACAGCCATCCCGATTACAGCAAAGCATGGGAGGAATATTACAAAAAACAGAGTGAGTGAAACAGGGTTGTTGGAGATTAAGGAAACTCTTGTGGCAGAGTTCACTCTAATCCGATGACTTGCGTCTCCATCCCCTGCCATCATTAGCTTCCAGTCCTCCGCAATTCCCTCTGGTCCCTCCAGTTGGTGATGGTGCATGGTAGTTCTTCCACTGGAAGCTGTCGTGGTGCCTGCTGCTGGGCCTCAGGAGGGCTGCTCCTGCTGAGCTTCAGTGCACAGCAGAGCCCGTGTCCGTGCTGGGGAAGCATTGCACACAGCGAGAATCGATGCTGACAAAACAAAACCCAGAAAGTTGAAGCTGGGTGGTCAAAAAGGTAGGAATGCTCTGCACACAGGTGTGTGGACAGTCGTGGCCCTGCCTTCCTCCGCTCCGTTAAGAGGCGTGTGGTGCCAGCTTCTGGATTTGCATTTGGCAGCCTGGGCTTTGTCTTACCAAACTGCTGATCTCTGCCTTTCCCCTTCTCTTTTCTCCAG
Seq C2 exon
GTCATGCTGCCAGCGCTGCTTCTCAGGCGAGCTCCCAGCCGGACTACACGATGGCCTGGGCAGAGTATTACAGACAGCAGGCTGCCTACTACGGGCAGACACTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.416
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PD(30.3=23.3),PF090055=DUF1897=WD(100=76.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]