MmuINT0066471 @ mm10
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31614711-31615625:+
Coord C1 exon
chr2:31614711-31614782
Coord A exon
chr2:31614783-31615497
Coord C2 exon
chr2:31615498-31615625
Length
715 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GTCTGTTCTTTGTCCTCCAGGTC
3' ss Score
11.85
Exon sequences
Seq C1 exon
GCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAAAAAGCAGA
Seq A exon
GTGAGTGCAGCCATCATGCGCTGTCCAGGGTCACCCGTACCCTCTCTGGGGCTGTGTCTAGGTGCCCATCTTGTCTCTCCATATGTCCTGTCAGAGGAAGCCAGATGTGGCCAGTGCCTACGGGGTGTGTTGTCCTCAGTCTTTGGGGGCCATGTCAGGGCAGGCAAGAGGTCACAGTGCAGAGATTGGGGCTACCACTTCACTGGCTGCTGGTACCTGTCTTTCCTTTGGAGTCCATTTCTCCTTATACTACCAGGAACCAGATCAGGCCTGAGGGTGATCGTCATTAGCGAAGGGCCTGGGCATGTTGCAGTCTAAGCCATTTTTGGGTCTAGTGTAGGATTGCACGGCAACATCTTACACCTAGAACCATTATGTGCTGATTGGAAGGCCCAGGGTAAAGCTGCTTGGCCTTGGGGGCCAAAAACATCTCTGGGCTGCACTGGTGACTGATGGGCTGGTGTCAGGTGTCTCCTCACTGGGGCTTGGGGCCTATTTAACACCCACCCACCCTCACCCAGCCCTACCTGAAAGCTGCCCTGCACTGGCTCTCCCAGCTCTGCCTGTGCCCAGGGCTGTTGCAGGCAGTCAGGGCAGTGTAGTCCTATAGAAGTGTAGCATCTAGGTGGGCTTTGGCTGAGGCTGGTAAGGCCTGAGAGAAGGGACCTCCCACCCCCTCCCCTTCTTTAACTCCTGTCTGTTCTTTGTCCTCCAG
Seq C2 exon
GTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843:ENSMUST00000113482:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.616
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(73.3=88.0)
A:
NA
C2:
PF090055=DUF1897=PD(23.3=13.5),PF090055=DUF1897=WD(100=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAGAGTCAGCCAC
R:
GCCTGAGCCTGCCCTAAAGT
Band lengths:
190-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types