GgaINT0124197 @ galGal3
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6538088-6538741:+
Coord C1 exon
chr17:6538088-6538164
Coord A exon
chr17:6538165-6538712
Coord C2 exon
chr17:6538713-6538741
Length
548 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AGCCAGATATTAGCATTAAGATA
3' ss Score
-8.63
Exon sequences
Seq C1 exon
TGGTCCTCAGGCGTTCATGACACAGGGTTGGGGCAGTACCTACCAGACGTGGCAGCAGCCTGGACAGCAAGTCCCAA
Seq A exon
GTAAGTGTTTAGGGCCTGGGTTTGAGAAAGATTGGTGTTCTCTTTGCCACTAGACACAGATTGATCCGTAAGACCACCTGTGTGAGGTGGTGTTAAAGCTTGGAATAAGCTGAAGTCCACCGGAACCAGTAACGCTTTTTGTGCACTTAACTGCTTGTTTCTGCTCCCTTTGTGTAGAAACCCACTTTGTAACATTTCTGCCTTAAGCTTTCTCTTGTGAGGATTCTCCAGACAAGCACTTGCTATCCCCACTTCTCCCTGACATGCACACCATGTCTGGTGGTGAGCCCTCCCATCTGCCTGCTTTTTAACTCATCAGTTCTTGATTATTATTTTTTTATACATGTTCTTTATGAGCTCTTCTCTAATTCCCACACTGATGGAAAGACTGGGAAATAGATGCAGAAAATGGAGATGTGTGGCTCCTATCCTGCTTCATTCATGCTGGCTGTAGTAGTGTCCTCTTATTTCCTTTTGGGAGCTGATAACTGCTTAGCTTCTGCAGCACTAAAAGCATGGAATGTGACCAGCCAGATATTAGCATTAAG
Seq C2 exon
ATAAAAGTGGCAGTGCACAAATATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]