BtaINT0064443 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100949140-100950538:+
Coord C1 exon
chr11:100949140-100949211
Coord A exon
chr11:100949212-100950410
Coord C2 exon
chr11:100950411-100950538
Length
1199 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CGCTCTGCTTTGCCTGTCAGGTC
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTACTACAAAAAACAGA
Seq A exon
GTGAGTGCTTCGGCCTCTCCACAGGGAGGCCCCGGCGCCGGGGCCCACGCCTGCGGGCTCCAGAGCCGTGGCTCCCGTCACCTCGCCGCGTGCCCTGTGTGCGTCCATCTGGGCGTCTGCCTGTATCTGCTCCACCTGCCCCAACCCTGTCAGCGAGTTGCGCGGGCGTCTTTGTCTTCCTCCCCTGCTCGATCTTCCCTTCTGGGCTCCACACGGGGCGAGCCTCAGCCTGGGCTGTCCATGTGAGGACCCTTGGTTAGGCCCAGGCCGGCCAGGGGCCGTCAGCCATCTCGCCACCCAGCCACTGCCCAGCTCTCCCTGGCCATCACGGGGCAGGTGAGGCAGGGAGGAGGTGAAACTGAGCGGGGCCTCTGAGGCTGCAGTAGGGACTGAGATGTTTTCTTCCAAAGTAAGCTCCTCGCTGTGCCAGTTTTCTCCACTAACCCAGTTTTTTTAAAAAGAGGAGAAAACTTCATAACGGCAACCCTCCCCCCAATAAAAACTACCTCAAGTGAATCACTGAAAATGAGTCCTGAGCCCTCTGTGTGCATCCCACAACTGCTGAACCAGCGCGTTCAGGTGTGGTCAGAAGAGGTGTCTCGTGTCTTGAGTCTGAAGGATCTCACTTGCTGCTTGGAAGAGCGCGGCTCAGACACTGTCAGAGAAGCAGTCATCCTGTGTTTGCGATCGTTACCAGGCCCATAGCCCTTCTAGGGGCCGGGGCAGGGGTCAGAGGGGTCACCGTCCCCTGGAGCAGCTGGTGAAGGCGCCTGTGCCCAGTCTTCCCAGACCCCCCCAACCCCCACGGTCCAGATCCTGGACCCCCATGGGCTGCGATGCCCCGTGCAGGCGCGCGCACATACACCCCTGCTGGGGCGCCTGCTTCCTTGCCCTCTCTCCTCCCACCCTGGCCCCGGGCACTGGCAGGGAGCTGGCTGGACAGACAGACGGACGCCGAGAACATGGCTGATGAGAGAAGCAGACTGTAGGTGTGGAGCGGGGCCCAGGCGAGAAAGCTCTGATAACCATGCTGTCTGCAGCCATGCTTGGGCAGACCACGTCTGGCCAGACAGCGTGGGCATCAGGCACTTCGTCCAGGCGCCCCCTGGGAAGCCTCCCAAGAGGCTCTGGGAAGGGGTTCCTGCAGGCTGACTGTGCCCTTTGCCTCCCAGTAACCGGCGCTCTGCTTTGCCTGTCAG
Seq C2 exon
GTCACGCCGCCAGCGCCGCGCCCCAGGCCAGCACCCCACCGGACTACACCATGGCCTGGGCGGAGTACTACCGGCAGCAGGTCGCCTTCTACGGGCAGACGTTAGGGCAGGCGCAGGCCCCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072:ENSBTAT00000017383:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(62.9=88.0)
A:
NA
C2:
PF090055=DUF1897=PD(34.3=27.9),PF090055=DUF1897=WD(100=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development