RnoINT0062957 @ rn6
Intron Retention
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10224176-10226087:-
Coord C1 exon
chr3:10226011-10226087
Coord A exon
chr3:10224248-10226010
Coord C2 exon
chr3:10224176-10224247
Length
1763 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCTGTCTGTTTTCTGCACAGGCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
CGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAGCAAGTCCCAA
Seq A exon
GTAAGTGACCCACAAGAGGGTGAGGATGCACACCAGGGTGGTCAGACTGATGCTTATAGAGCCAGGCAACTGGGGTGGGGGTAGGGAGAGTTGCTCAGTTCCACTCCTGGTGTGGCAATGCTCCTCCCTAGAAATGGGGCCTAGTAGACCCAGGCTGTGGGAACACATAGTAGGTAAGGCTGCTTTCCCTGGCTCACACAGGACCTATTCAGAGCAGGGGTTTGGGCTGGAAAGGACAGTGGGTGTGGTTTGACAAGGCTCTCTAGTCTCCATTTCTAAGGCTAAGCTCCAACCAAGAGCTTCTCTGTACTCTGCTCTCCTAGGCAGCTTCCTGCCTGGCAGGGACACACACACACACACACACACACACACACACACACACACACACACATCACCCTACTTAGTCTTCTTGTGTCAGGACGACTTCTCTTCAGTGACCTAGCAAAGGACATTTTCTGTCACCTAGACTTCTCAGAAACAGAATTGTGTCTGCCCAGCCGCTAAGAGGAGGAGGAGCTTGTACAGTCTTCAGCCCTCTCCATCCACTCTGCCACCTCTGCTCTGTTTGCCTTTCTCAAACAGCAGCCAAAGTGTTTGATGAGCTCTGTGACCTCAGCCATTTTGTTCCCTTCCCTCCCTCAAACCCAATGACTCAAGTGTCAGACTCTGATAGGTGCTTCCCAGTGAGCAGCTGCTGGTGCACACCCTCCTCACTGACCAGGCTTGCTCTGCTGAGCACTGGGTTCCTGAGCATTCTGCTGTCTCCTTGTGACCTGGAAGTAGTGGTCTTGAAGTGCTAGGCTCTTGGATGCTATTCTGACATCTCTATCCCCAAGGCAAGAGAGTGACAGGATTGTTCCCAGATGCACCCCTGAGAGGAAAAATTCCTCCCCACTTCCCCAAAAGGAGCACTTAGAGTCAAGGTCCAGCAGAATCTGAAGCCCAATTGGTTGGCTTTGGTGTGGGTGGTAAACAGGAAGAAGTAAGACAGACTAGCTGCTTCTAGCTGTGTGGCTGAGTGCTGCCTGTGCCCAGGTCAGGGCCTGTGCAAACAGTCCTGTGCACACCGTTCGTCCCAGGGAAGAAAACAGAAGCTGTTCCTCCCTGCAGTTCTGCGCCCGTCTGCTTTCCCTCCAGCTAATTAGCATAGCAAAAACAACAGGCACTCTGCTGAGCCTGTGGACTTGGTCCATCTTCCTCTAGCTGCCTTACGTTGGCTCTGTTGAGTGGTGAAGAGTTCTGGTGAGCTCGTGCTTGTCCCTGACCTCTCTGCCTTGTCATCTGCTCGAGCCCAATGCGCCTTTCCTTGACGCTGTCTCCTGTCTCCTCATTTCTGTCTCCCCTGCCAACAGTGGAGGAGGAGGCACCTAGGCCTCTGTGCTGTTCCCACACAGCAAGGCCAGGCCAGGCAAGATCCCAGGTGGGCCTGTTACTTCTGTCATTGGCATGTGCACCATGGCCACATGTGCACAAGGTCTCCCTGGCTTAAACCCCAAGCCTATGCCTTCATGTCAGGTTTTACACAGGGAATCCCCACTCCTAACCTTTCTTGTGCAGAGGGACAGTGGTTGAGCTTGTGGGGCCTCATGAGGTGTCAGCACCATTTGGACTCTATCCATGACGAACTAGGTCTAGAGTTTGAGAAGGCTTTGGCTTCCAGCCCTGCCTCCTAAAGACCCTGGTTGAAGCCAGCTTCACTGGGCTGAAGTCGCCAGGGTGGGAGTTCCTGAGCAAGGCCTGACTGCTGTCTGTTTTCTGCACAG
Seq C2 exon
GCCAGCAGAGCCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139:ENSRNOT00000021871:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PU(66.7=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]