DreINT0011646 @ danRer10
Intron Retention
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:875432-875653:+
Coord C1 exon
chr5:875432-875508
Coord A exon
chr5:875509-875584
Coord C2 exon
chr5:875585-875653
Length
76 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AGCTTTTACTGCTGTTTCAGGTC
3' ss Score
7.93
Exon sequences
Seq C1 exon
TGGGCCGCAGACGTTCATGACCGGAGGTTGGGGCACCACCTATCAGACGTGGCAGCCTCAGAGTCAGCAGGACCCCA
Seq A exon
GTGAGTGTGTGTTTCTGTGTTTTTCCTGCATCTTCTGTCTTCAGCATTAAAACGTGAGCTTTTACTGCTGTTTCAG
Seq C2 exon
GTCACAACGGCTCTCAGAGCGGACAGATGGACTACTCCAAAGCCTGGGAGCAGTATTATAAGAAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896:ENSDART00000166336:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PU(75.9=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCGCAGACGTTCAT
R:
GCTTCTTATAATACTGCTCCCAGGC
Band lengths:
143-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]