MmuEX0019739 @ mm10
Exon Skipping
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31613031-31615625:+
Coord C1 exon
chr2:31613031-31613107
Coord A exon
chr2:31614711-31614782
Coord C2 exon
chr2:31615498-31615625
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTTTTCTGCACAGGCC
3' ss Score
9.97
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAACAAGTCCCAA
Seq A exon
GCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAAAAAGCAGA
Seq C2 exon
GTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-'29-42,'29-39,30-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=1.000 C2=0.616
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(73.3=88.0)
C2:
PF090055=DUF1897=PD(23.3=13.5),PF090055=DUF1897=WD(100=63.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTTCTGACCCAAGGCTG
R:
TGCCCTAAAGTCTGCCCATAGA
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types