BtaEX6046787 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100946449-100950538:+
Coord C1 exon
chr11:100946449-100946525
Coord A exon
chr11:100949140-100949211
Coord C2 exon
chr11:100950411-100950538
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGTTCTCCGCACAGGCC
3' ss Score
10.21
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGTCCTCCCGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTTCCAA
Seq A exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTACTACAAAAAACAGA
Seq C2 exon
GTCACGCCGCCAGCGCCGCGCCCCAGGCCAGCACCCCACCGGACTACACCATGGCCTGGGCGGAGTACTACCGGCAGCAGGTCGCCTTCTACGGGCAGACGTTAGGGCAGGCGCAGGCCCCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-'30-28,'30-27,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.880 C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(62.9=88.0)
C2:
PF090055=DUF1897=PD(34.3=27.9),PF090055=DUF1897=WD(100=74.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCGCCTTTCTGACC
R:
CCCTAACGTCTGCCCGTAGAA
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]