HsaEX0026573 @ hg19
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133507589-133511513:+
Coord C1 exon
chr9:133507589-133507665
Coord A exon
chr9:133510054-133510125
Coord C2 exon
chr9:133511386-133511513
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGTTCTTCGCACAGGCC
3' ss Score
9.28
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTCCCAA
Seq A exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCAACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGA
Seq C2 exon
GTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164_MULTIEX2-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.880 C2=0.472
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=WD(100=74.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCGGCCTTTCTGACC
R:
CGTCTGTCCGTAGAAAGCGAC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)