BtaEX0019071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19268896-19269635:+
Coord C1 exon
chr7:19268896-19269096
Coord A exon
chr7:19269202-19269279
Coord C2 exon
chr7:19269358-19269635
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCGGGGCCTGCCCCCACAGGCC
3' ss Score
8.2
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
ATAAAGCCGCAGCCGCCGCAGCCGACCCCAACGCCGCCTGGGCCGCCTACTACTCACACTACTACCAGCAGCCCCCAGGCCCTGTGCCCGGCCCGGCACCAGCCCCCGCGGCCCCACCCACCCAGGGTGAGCCCCCTCAGCCTCCACCTGCTGGTCAGTCGGACTACACTAAGGCCTGGGAAGAGTATTACAAAAAGATCG
Seq A exon
GCCAGCAGCCCCAGCAGCCTGGAGCGCCCCCGCAGCAGGACTACACGAAGGCCTGGGAAGAGTACTACAAGAAGCAGG
Seq C2 exon
CTCAAGTGGCCACCGGAGGGGGTCCAGGAGCACCCCCGGGTTCCCAGCCAGACTACAGTGCTGCCTGGGCTGAATATTACAGACAGCAAGCCGCTTACTACGGACAGACTCCAGGTCCCGGCGGCCCCCAGCCTCCACCCACACAGCAGGGACAGCAGCAGGCAAGTGGGAATTGCCACCCTCCTCCTCCTCCTTTCTCCTTCCAACCCCCGGCCACCGTCCATCCTGCCTTAGTGGGTAGCGCCGGAAACCCCTTCCCCTGCGGGGTGTGTCCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018-'19-29,'19-26,20-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=1.000 C2=0.804
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(77.8=30.9)
A:
PF090055=DUF1897=PD(18.5=18.5)
C2:
PF090055=DUF1897=WD(100=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGTCAGTCGGACTA
R:
GGAGTCTGTCCGTAGTAAGCG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development