GgaEX0005268 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5942360-5946701:+
Coord C1 exon
chr17:5942360-5942436
Coord A exon
chr17:5944479-5944547
Coord C2 exon
chr17:5946574-5946701
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTCCTGCTGCAGATC
3' ss Score
10.66
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TGGTCCTCAGGCGTTCATGACGCAGGGTTGGGGCAGTACCTACCAGACGTGGCAGCAGCCTGGACAGCAAGTCCCAA
Seq A exon
ATCACAATGGTACCCAGTCAGGCCAGGTGGAGTTCACCAAGGCATGGGAGGATTATTATAGGAAACTAG
Seq C2 exon
GTCATGCTGCCAGCGCTGCTTCTCAGGCGAGCTCCCAGCCGGACTACACGATGGCCTGGGCAGAGTATTACAGACAGCAGGCTGCCTACTACGGGCAGACACTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX2-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.898 A=0.500 C2=0.416
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PD(30.3=23.3),PF090055=DUF1897=WD(100=76.7)
Main Inclusion Isoform:
ENSGALT00000039554fB551
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCAGGCGTTCATGAC
R:
CCCTAGTGTCTGCCCGTAGTA
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]