GgaEX0005268 @ galGal3
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6538088-6541851:+
Coord C1 exon
chr17:6538088-6538164
Coord A exon
chr17:6540209-6540277
Coord C2 exon
chr17:6541751-6541851
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTCCTGCTGCAGATC
3' ss Score
10.66
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TGGTCCTCAGGCGTTCATGACACAGGGTTGGGGCAGTACCTACCAGACGTGGCAGCAGCCTGGACAGCAAGTCCCAA
Seq A exon
ATCACAATGGTACCCAGTCAGGCCAGGTGGAGTTCACCAAGGCATGGGAGGATTATTATAGGAAACTAG
Seq C2 exon
GCCAACAGAGCCAGCAGCAGAACAGCCATCCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941-'25-31,'25-27,28-31
Average complexity
S
Mappability confidence:
75%=67=83%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.991 A=0.244 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTCAGGCGTTCATGA
R:
ATCGGGATGGCTGTTCTGCT
Band lengths:
112-181
Functional annotations
There are 0 annotated functions for this event