HsaEX6092256 @ hg38
Exon Skipping
Gene
ENSG00000088247 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr19:6415141-6415734:-
Coord C1 exon
chr19:6415534-6415734
Coord A exon
chr19:6415380-6415457
Coord C2 exon
chr19:6415141-6415301
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCGGCGCCCGCACAGGCC
3' ss Score
5.95
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCAAAGCAGCTGCAGCGGCCGCGGACCCCAACGCCGCGTGGGCCGCCTACTACTCACACTACTACCAGCAGCCCCCGGGCCCCGTCCCCGGCCCCGCACCGGCCCCTGCGGCCCCACCGGCTCAGGGTGAGCCCCCTCAGCCCCCACCCACCGGCCAGTCGGACTACACTAAGGCCTGGGAAGAGTATTACAAAAAGATCG
Seq A exon
GCCAGCAGCCCCAGCAGCCCGGAGCACCCCCACAGCAGGACTACACGAAGGCTTGGGAGGAGTACTACAAGAAGCAAG
Seq C2 exon
CGCAAGTGGCCACCGGAGGGGGTCCAGGAGCTCCCCCAGGCTCCCAGCCAGACTACAGTGCCGCCTGGGCGGAATATTACAGACAGCAGGCCGCTTACTACGGACAGACCCCAGGTCCTGGCGGCCCCCAGCCGCCGCCCACGCAGCAGGGACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088247-'34-33,'34-29,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=0.982 C2=0.859
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(77.8=30.9)
A:
PF090055=DUF1897=PD(18.5=18.5)
C2:
PF090055=DUF1897=PD(14.8=7.4),PF090055=DUF1897=WD(100=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACTACTACCAGCAGCCC
R:
GAGCTCCTGGACCCCCTC
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains