RnoEX6038539 @ rn6
Exon Skipping
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10021283-10022330:+
Coord C1 exon
chr9:10021283-10021483
Coord A exon
chr9:10021560-10021637
Coord C2 exon
chr9:10021722-10022330
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACACTACCCTGTTCCTCAGGCC
3' ss Score
7.03
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACAAAGCTGCAGCAGCAGCTACAGACCCTAATGCTGCCTGGGCCGCCTACTACTCCCACTACTACCAGCAACCCCCAGGCCCCGTGCCAGGCCCTGCCCCAGCCCCTGCAGCCCCACCTGCGCAAGGGGAGCCCCCCCAGCCTCCACCTACTGGCCAATCAGACTATACCAAGGCTTGGGAAGAGTATTACAAAAAAATTG
Seq A exon
GCCAGCAGCCCCAGCAGCCTGGGGCGCCCCCACAGCAGGATTACACCAAGGCCTGGGAGGAGTACTACAAGAAGCAAG
Seq C2 exon
CACAAGTGGCCACTGGTGGGGGTCCTGGAGCACCCCCTGGCTCCCAGCCTGACTACAGTGCCGCCTGGGCTGAGTATTACAGACAGCAGGCTGCTTACTACGGACAGACCCCAGGCCCTGGTGGCCCACAGCCACCTCCCACCCAGCAGGGACAGCAGCAGGCAAGTGGGAACTGCCACCCTCCTCCTCCTCCTTTCTCCTTCCAACCCCCGGCCACCGTCCATCCTGCCTTAGTGGGTAGCGCCGGAAACCCTTTCCCCTGCGGGGTGTGCCCTTGATGCCAGCCTCGGGCTCGTGGCCAGAGTCTCCCAGAGCCCCGCAGCCCCGCCGCTGGGAAGCGCTCGATGGGTGCAGAGGCTCACTGAAGAGGCTTCTCCGGTAGCCACTGTTGGTGCGACGTTGTCGGGTGCTGGGGGCACCGGCCGCAAAGGTGGAACTCTGAACTGCTGGGGTGTCCCGGGTGGGGGCAGGAAGTGGGGACTGTGCTGGGTACCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628-'17-18,'17-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=1.000 C2=0.818
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(77.8=30.9)
A:
PF090055=DUF1897=PD(18.5=18.5)
C2:
PF090055=DUF1897=WD(100=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTACTGGCCAATCAGA
R:
GGGGTCTGTCCGTAGTAAGCA
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]