MmuEX6101329 @ mm9
Exon Skipping
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52578936-52598514:-
Coord C1 exon
chr2:52598197-52598514
Coord A exon
chr2:52579918-52580002
Coord C2 exon
chr2:52578936-52579011
Length
85 bp
Sequences
Splice sites
3' ss Seq
TATGTTAATACATCTTACAGAAA
3' ss Score
5.84
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CAATCCCCAGAGAGGCAGCTGTGAAAATGTTCAGTCCCTTTGTGGCTTCCGACTGATCGCAACAGGCATGTGAAGGGCACTTCACTGCGCCTTCTCACACTCGGAGGAAGCTCGTGTTTCCCTGAGACAGAAGGATAATGCTCGCTCTACGCACCACCCTATGCACAAGGGATGATGAAGTTCAGGTTATATGAGGACAGTACAAAGGTTGGCAGGTTGCAGAGTGGTCCAGGTGTGCAGGAAGAAGCATGAATCTCCTCCATGGAATGGGAGAAAAGGCTGTGGCACAAGCGTCCATGTGAGCATCCACCCAGCAAG
Seq A exon
AAAAAGCCACAAATGAGTACAACACCACAGAAGACTGGAGTCTGATCATGGACATCTGTGACAGGGTTGGAAGCACTCCCAGTGG
Seq C2 exon
AGCAAAAGATTGCCTAAAAGCCATAATGAAAAGGGTAAACCATAAGGTCCCTCACGTTGCTCTGCAGGCATTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371-'1-5,'1-4,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.224 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0079014=VHS=PU(18.5=92.3),PF145001=MMS19_N=PU(17.2=76.9)
C2:
PF0079014=VHS=FE(38.5=100),PF145001=MMS19_N=FE(43.1=100),PF0298517=HEAT=PU(67.7=80.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAAGGTTGGCAGGTTGC
R:
GCAACGTGAGGGACCTTATGG
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: