DreEX0075734 @ danRer10
Exon Skipping
Gene
ENSDARG00000005318 | stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:ZFIN;Acc:ZDB-GENE-041114-64]
Coordinates
chr9:38233542-38240022:+
Coord C1 exon
chr9:38233542-38233706
Coord A exon
chr9:38236246-38236330
Coord C2 exon
chr9:38239947-38240022
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATGCTCATTTGTATTTTCAGAGA
3' ss Score
7.57
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AAGTTTACGGAAGAGCAACTGGTGGAAGTGAACGCAATTTAATGGATGAGAGAAGGATAAATCGTCGATCTACGTAGATAATACGCTTCAGTTTTTTTCTTTGACACATAGGAAAAGGTTACAAAATGCCGTTGTTTGGTCAAAACCCGTTCGATCAGGATGTGG
Seq A exon
AGAAAGCAACTAGTGAAACCAACACAGTGGAGGACTGGGGCCTCATTATGGATATCTGTGACCGTGTCGGGACAGCTCCAAATGG
Seq C2 exon
TGCAAAGGATTGTCTGAGGTCGATCATGAAGCGAGTAAACCACAAGGTCCCTCATGTCGCTATGCAAGCATTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005318-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=PU(6.7=64.3)
A:
PF0079014=VHS=FE(20.7=100)
C2:
PF0079014=VHS=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTGGTGGAAGTGAACG
R:
CGACCTCAGACAATCCTTTGCA
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]