RnoEX6016872 @ rn6
Exon Skipping
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38253003-38277440:-
Coord C1 exon
chr3:38277288-38277440
Coord A exon
chr3:38254077-38254161
Coord C2 exon
chr3:38253003-38253078
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTGTTAATACATCTTACAGAAA
3' ss Score
6.28
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CGGAAGTGAAGGCACGGCTCGGCCAAGCGGTCTAGGAAGCCGCGGCCGGTCGCCCAGCGGGGGCAGTCGGAACCCCGCCAGACCGTCGGGATTCAGCTCCCGTTGCCGGCGCAATGCCTCTGTTCACTGCCAACCCATTCGAGCAAGATGTGG
Seq A exon
AAAAAGCCACAAACGAGTACAACACCACAGAAGACTGGAGTCTGATCATGGACATCTGTGACAGGGTTGGAAGCACTCCCAATGG
Seq C2 exon
AGCAAAGGATTGCCTAAAAGCTATAATGAAAAGGGTAAACCATAAGGTCCCTCATGTTGCTCTGCAGGCATTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447-'1-3,'1-2,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=PU(7.3=71.4)
A:
PF0079014=VHS=FE(20.4=100)
C2:
PF0079014=VHS=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGCGGTCTAGGAAGC
R:
ACCCTTTTCATTATAGCTTTTAGGCA
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]