GgaEX6043308 @ galGal3
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
NA
Coordinates
chr7:37042982-37052723:-
Coord C1 exon
chr7:37052663-37052723
Coord A exon
chr7:37044829-37044913
Coord C2 exon
chr7:37042982-37043057
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAATCTTGTTTTCTTTATAGAAA
3' ss Score
8.02
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GGCCGGGCGGCCGCCGTCGAGATGCCGCTTTTCGCCTCCAACCCCTTCGAGCAGGACGTGG
Seq A exon
AAAAGGCTACAAATGAACACAACACCAGTGAGGACTGGGGTCTTATTATGGACATATGTGACAAAGTTGGAAGTACTCCTAATGG
Seq C2 exon
GGCAAAGGATTGCCTTAAAGCCATCATGAGGAGAGTAAATCATAAAGTTCCCCATGTGGCTCTGCAAGCGCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'1-3,'1-0,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.241 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=PU(6.7=64.3)
A:
PF0079014=VHS=FE(20.7=100)
C2:
PF0079014=VHS=FE(18.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCGAGATGCCGCTTTTC
R:
CAGAGCCACATGGGGAACTTT
Band lengths:
112-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]