GgaEX6043308 @ galGal4
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
signal transducing adapter molecule 2 [Source:RefSeq peptide;Acc:NP_001012940]
Coordinates
chr7:34915515-34925235:-
Coord C1 exon
chr7:34925196-34925235
Coord A exon
chr7:34917362-34917446
Coord C2 exon
chr7:34915515-34915590
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAATCTTGTTTTCTTTATAGAAA
3' ss Score
8.02
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATGCCGCTTTTCGCCTCCAACCCCTTCGAGCAGGACGTGG
Seq A exon
AAAAGGCTACAAATGAACACAACACCAGTGAGGACTGGGGTCTTATTATGGACATATGTGACAAAGTTGGAAGTACTCCTAATGG
Seq C2 exon
GGCAAAGGATTGCCTTAAAGCCATCATGAGGAGAGTAAATCATAAAGTTCCCCATGTGGCTCTGCAAGCGCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'1-5,'1-1,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.276 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=PU(22.2=71.4)
A:
PF0079014=VHS=FE(20.7=100)
C2:
PF0079014=VHS=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCGCCTCCAACCCCTTC
R:
GCTTGCAGAGCCACATGGG
Band lengths:
103-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]