MmuALTA0008750-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000027102 | Hoxd8
Description
homeobox D8 [Source:MGI Symbol;Acc:MGI:96209]
Coordinates
chr2:74544028-74544674:+
Coord C1 exon
chr2:74544028-74544175
Coord A exon
NA
Coord C2 exon
chr2:74544574-74544674
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
TTGTTGTTTTTAATCAGCAGCTC
3' ss Score
4.95
Exon sequences
Seq C1 exon
AGACAGCCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCGAGGACCCAGACCACTTAAATCAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATGAGACCACAAG
Seq A exon
NA
Seq C2 exon
CTCCTGGTAGACGGAGAGGAAGACAAACCTACAGTCGCTTCCAAACCCTAGAGTTGGAAAAGGAATTCCTTTTTAACCCTTATCTGACCAGGAAGAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027102-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=57.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCTCGTCTCCTTCTCA
R:
GGGTTTGGAAGCGACTGTAGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: