MmuINT0140198 @ mm9

Intron Retention

Gene

ENSMUSG00000026927 | Sdccag3

Description

serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]

Coordinates

chr2:26240202-26240665:-

Coord C1 exon

chr2:26240603-26240665

Coord A exon

chr2:26240342-26240602

Coord C2 exon

chr2:26240202-26240341

Length

261 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

3' ss Seq

AACTTCGCCCTTCTCTCTAGGCC

3' ss Score

9.57

Exon sequences

Seq C1 exon

AAACGGGCTGTAAAAGCAGAAAATCATGTCTTGAAGCTGAAACAGGAAATAAATTTGCTTCAG

Seq A exon

GTAAGTAAAGAGAAAGGTTTGGCTGTCATACATGTGAGTTCAGGGAGGGAGAAAATAGTGTAAGCCAAGCACAGCGGTCGGAGCAGTCAGGAGGCTGAGGAAAAGGATAGTTGTACATTTAAGGCCAGCCTGGGCTACAGAGGCAAGAAGCACCTGTTTTGAACAGGCCAGGGCCAGGCTGGTCCCCGTGTCCAGATGTGTGCCCGTCGTGATGCAGAGGCTGAATTGCCTCGGGAGCACTAACTTCGCCCTTCTCTCTAG

Seq C2 exon

GCCCAGCTCTCAAACTTGAGGCGAGAAAATGAAGCCCTGCGGTCAGGCCAGGGTGCCAGCCTTTCTGTAGTGAAGCAGAACACCGACGTGGCCTTGCAGAACCTCCACCTTGTCATGAACAGTGCACACGCATCCATAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000026927-Sdccag3:NM_001085408:6

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.085

Domain overlap (PFAM):

C1:

PF0076914=ERM=FE(11.1=100),PF0026115=Tropomyosin=FE(10.8=100),PF131661=AAA_13=FE(16.7=100),PF138631=DUF4200=FE(19.4=100),PF052669=DUF724=FE(20.0=100)

A:

NA

C2:

PF0076914=ERM=FE(25.6=100),PF0026115=Tropomyosin=FE(24.7=100),PF131661=AAA_13=PD(12.5=31.9),PF138631=DUF4200=PD(15.5=34.0),PF052669=DUF724=PD(19.0=40.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000109737