BtaINT0129895 @ bosTau6

Intron Retention

Gene

ENSBTAG00000001352 | SDCCAG3

Description

Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]

Coordinates

chr11:103912084-103912660:-

Coord C1 exon

chr11:103912598-103912660

Coord A exon

chr11:103912224-103912597

Coord C2 exon

chr11:103912084-103912223

Length

374 bp

Sequences

Splice sites

5' ss Seq

CAGGTAACT

5' ss Score

8.63

3' ss Seq

TAACGTCTCCTCTCCCACAGGCC

3' ss Score

11.2

Exon sequences

Seq C1 exon

AAACGTGCAGTGAAGGCAGAAAATCACGTCCTGAAACTGAGACAGGAGGTCAGCTTGCTCCAG

Seq A exon

GTAACTAGCAAGAGGGCCTCACCAGTTCGCGTGTGAGTGAAAGAACCTTTCCTCCTCCACCCTCCCCTCCAGTTCCCTCCCAACAAGACAAAGCACCCGAATCAGGACGTATGAGCTGCCTTCTCAGGGCCTCCTGGTTGAGCCCCACACGGGGCTGGGGGTGGGTCCGAGCACCCCAGATGGCGGGCGAGGTACCAGCACGGCAAGAGGTCATGTCCTTCAGGAGCCCCCCAGTCAGGGCAGGGCGCCTTGTCGTGGGGGCACACGGTGCCCTCTGGTCGCACTGCCTCGGGCGCGGGGCTTGGTTTCGGTCGGACGGCCTCTTGGCCGCTTCCTGCTCAGCCGGGAAAGTCGTAACGTCTCCTCTCCCACAG

Seq C2 exon

GCCCAGGTCTCTGACTTCAAGCGTGAGAACGAAGCCCTGCGGTCAGGCCAGGGCGCCAGCCTGACGGTGGTGAAGCAGAACACGGACGTGGCCCTGCAGAACCTCCGTGTGGTCATGAACAATGCTCATGCCTCCATTAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000001352:ENSBTAT00000055628:7

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.112

Domain overlap (PFAM):

C1:

PF041569=IncA=FE(12.4=100),PF079026=Gp58=FE(11.6=100),PF131661=AAA_13=FE(13.8=100),PF0076914=ERM=FE(12.4=100),PF057016=WEMBL=FE(13.5=100),PF0026115=Tropomyosin=FE(17.1=100),PF149321=HAUS-augmin3=FE(13.4=100),PF107214=DUF2514=FE(20.2=100)

A:

NA

C2:

PF041569=IncA=PD(15.5=53.2),PF079026=Gp58=FE(26.6=100),PF131661=AAA_13=PD(28.3=87.2),PF0076914=ERM=FE(28.6=100),PF057016=WEMBL=FE(31.1=100),PF0026115=Tropomyosin=PD(17.1=42.6),PF149321=HAUS-augmin3=FE(30.9=100),PF107214=DUF2514=PD(23.2=48.9)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000049441