MmuINT0063572 @ mm9
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25356298-25357671:+
Coord C1 exon
chr2:25356298-25356406
Coord A exon
chr2:25356407-25357455
Coord C2 exon
chr2:25357456-25357671
Length
1049 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCGCCACTGGTGGGTTTCAGGAC
3' ss Score
6.98
Exon sequences
Seq C1 exon
GATGCCTCGGGGCTCTCAGCGTCGAGCCTGGCGCCTCCATAAAGACGTGGAGGTGGAGACTAGAGCGGCGGCGGAAGCCGGGCGCAGCGCAGCGGGCAGAGGCACCGCG
Seq A exon
GTGAGTCCCGGCTTTGGCCCCGCCGTGCTCACTCACCTGTGTCATCTGCCCTGTCCCCAGTCACCAGCCTTGTGCCCCATTACTCCCAGTCCTGCATTCACCAGCCTTCTGCCACCTTCGGTGTCCCTTGTCCCCGATCGTGGCCTTCGTTTATTTTCTCGGGCCTGGTCCCGGTCATGGGCCTCGCTCTGCCTTGTCCTACTTTAACTGGCTTTTGTCACCTTCACGGGCTTTGTTCACTGTCACCATATTTTTTTCCTGCAATGTCTACACTTGTACAGCCTTTGGTGGCCTTATCTGGCCAGTGATGGCCTTGGCAGGTTGACGTCGTCCCAATCCACCCTCCGGTGTTCAGTGGGTGAATGAAGGAGCTGCTGCCCACTCTAGCTAAGCAGCAAAGCGTGGTCCCTGATGTCTCCTCTGACATTCAGAAACCCCAATCACTCTTAACCACCCTCCTGGCCAGGCTGTCTCCTGAGTCCAGAACGACATATGCCACTGGCTAGCAGGAACCCCTTCTCAGAAGAAAGTCAGCCTTGGCCTGAAGTCCTATAGCAGCAAGGTCAAAGACAGGGTGGGCTGCTAAACCTTGGACCTGCCAGTTTGAGCAGCCCAGACCTGTTTGCTTGTCTTGTGCTCACCTGCCTCCCTGTGCCCTGTAGCATTGGGGAAGGCATCAAAGGCCCCCACCTGGAAAGTGGGGCTGCCCCCCACTTCGCAGGTTCTACCTGGCCTAGTAGTACTCAGGGGCTTGCTGTCTGGTCCAGCAAGTCCTTTGGTGTCCTGGAGAATGTAAGGTGGTGCAACGTTACTGCCTGGGTCCTTCAAGAAGTGTTGGGTCTGTGGTGGGGCAGTGCTACTTGTACACACAAAGAGAGATGCACACATCCCTCCCCTCCCCCCGCACATGCTCAGTGCAGTGGAATTCTCCGGTGGGCAGTTGGTGGGGCTAGCTAGGACTGCCATGTCTGGAACCCCAGACTATCAGTCTCTCCCTGGGGTTGGCGATGAGGAGGCTTGGGTTCAGAGCCGCCACTGGTGGGTTTCAG
Seq C2 exon
GACCGTCTGGGCAGAATGTCACGATGGATGAGGGGGGCCTGCCCCTGCTCCCCGACAGCCTTGTCTACCAGATCTTCCTGAGTTTGGGCCCTGCAGATGTGCTGGCTGCTGGGCTGGTATGCCGCCAATGGCAGGCTGTGTCCCGGGATGAGTTCTTATGGAAGGAGCAATTCTACCGCTACTACCAGGTGGCTCGAGATGTGCCCCGCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-Fbxw5:NM_013908:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTCTCAGCGTCGAG
R:
GGCGGGGCACATCTCGAG
Band lengths:
311-1360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: