HsaINT0063054 @ hg19
Intron Retention
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:13613]
Coordinates
chr9:139838343-139839173:-
Coord C1 exon
chr9:139839046-139839173
Coord A exon
chr9:139838559-139839045
Coord C2 exon
chr9:139838343-139838558
Length
487 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CAGCCGTTGGTGGGTTTCAGGGC
3' ss Score
5.89
Exon sequences
Seq C1 exon
CGGGGCTCGTGGCGTCGGGCCTGGCGGGCTCCCCGTTGGGCGGGGGCGGCGGTCCGAGCGGCTGCGGCAGCGGAAGCGGGTCCGGGTCGCGCAGGGCGGGGGCGGCGCAGCGGGCGGAGGCGGCCGTG
Seq A exon
GTGAGTGCGCCTGCGGCCCTCGGGGGTCCCGCCTTGTCGTCCCCGCCCGCCTTGGGCGAGTGCAGGAGCCCCGAGGCCGCCCGTGCGCTCGTCCCCGCCGTCCGCCCCGAGCCCGCCGGGCAGAGCTGCTCCAGGGCCGCAGGGCGGAGGCCACTGCCTGGCCGCCCCGAGCTTCCTCTCGGCGGAAGCCCGTCCCCGGACGGCGCCTGGTGTCCCCGTGCCTCGCGTGCGGCGGTCCGGGCCCTGGCGGGCTGAGGGGCGCCCGCTGCCGGCCGCAGGAGGCCGGGGGATGACGCGGCGGAGAGGGGCCGGCCCGGCCCGCCCGGAGCTGCCGGGTCCTTGGTTGGGCGGCGGTACCCGGGCGTCCCCTGCAGACACGCAGCCCCGTGGAACTCCCGGCGGGACGGTTGGGGCTGGAGGAACAGGACGCCCGCTCTCGGCCTCCCTTCCCGGGCCTGGGCTGAGGGCAGCCGTTGGTGGGTTTCAG
Seq C2 exon
GGCCGCCTGGGCAGAATGTCACGATGGACGAGGGCGGCACGCCCCTGCTCCCCGACAGCCTGGTCTACCAGATCTTCCTGAGCCTGGGCCCGGCCGACGTGCTGGCCGCCGGGCTGGTGTGCCGCCAATGGCAGGCCGTGTCGCGGGACGAGTTCCTGTGGAGGGAGCAGTTCTACCGCTACTACCAGGTGGCCCGCGACGTGCCCCGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069-FBXW5:NM_018998:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)