MmuINT0063572 @ mm10
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25500750-25502151:+
Coord C1 exon
chr2:25500750-25500886
Coord A exon
chr2:25500887-25501935
Coord C2 exon
chr2:25501936-25502151
Length
1049 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCGCCACTGGTGGGTTTCAGGAC
3' ss Score
6.98
Exon sequences
Seq C1 exon
GAAGGGGGGGGGGGGGGAACGGTCCATCGATGCCTCGGGGCTCTCAGCGTCGAGCCTGGCGCCTCCATAAAGACGTGGAGGTGGAGACTAGAGCGGCGGCGGAAGCCGGGCGCAGCGCAGCGGGCAGAGGCACCGCG
Seq A exon
GTGAGTCCCGGCTTTGGCCCCGCCGTGCTCACTCACCTGTGTCATCTGCCCTGTCCCCAGTCACCAGCCTTGTGCCCCATTACTCCCAGTCCTGCATTCACCAGCCTTCTGCCACCTTCGGTGTCCCTTGTCCCCGATCGTGGCCTTCGTTTATTTTCTCGGGCCTGGTCCCGGTCATGGGCCTCGCTCTGCCTTGTCCTACTTTAACTGGCTTTTGTCACCTTCACGGGCTTTGTTCACTGTCACCATATTTTTTTCCTGCAATGTCTACACTTGTACAGCCTTTGGTGGCCTTATCTGGCCAGTGATGGCCTTGGCAGGTTGACGTCGTCCCAATCCACCCTCCGGTGTTCAGTGGGTGAATGAAGGAGCTGCTGCCCACTCTAGCTAAGCAGCAAAGCGTGGTCCCTGATGTCTCCTCTGACATTCAGAAACCCCAATCACTCTTAACCACCCTCCTGGCCAGGCTGTCTCCTGAGTCCAGAACGACATATGCCACTGGCTAGCAGGAACCCCTTCTCAGAAGAAAGTCAGCCTTGGCCTGAAGTCCTATAGCAGCAAGGTCAAAGACAGGGTGGGCTGCTAAACCTTGGACCTGCCAGTTTGAGCAGCCCAGACCTGTTTGCTTGTCTTGTGCTCACCTGCCTCCCTGTGCCCTGTAGCATTGGGGAAGGCATCAAAGGCCCCCACCTGGAAAGTGGGGCTGCCCCCCACTTCGCAGGTTCTACCTGGCCTAGTAGTACTCAGGGGCTTGCTGTCTGGTCCAGCAAGTCCTTTGGTGTCCTGGAGAATGTAAGGTGGTGCAACGTTACTGCCTGGGTCCTTCAAGAAGTGTTGGGTCTGTGGTGGGGCAGTGCTACTTGTACACACAAAGAGAGATGCACACATCCCTCCCCTCCCCCCGCACATGCTCAGTGCAGTGGAATTCTCCGGTGGGCAGTTGGTGGGGCTAGCTAGGACTGCCATGTCTGGAACCCCAGACTATCAGTCTCTCCCTGGGGTTGGCGATGAGGAGGCTTGGGTTCAGAGCCGCCACTGGTGGGTTTCAG
Seq C2 exon
GACCGTCTGGGCAGAATGTCACGATGGATGAGGGGGGCCTGCCCCTGCTCCCCGACAGCCTTGTCTACCAGATCTTCCTGAGTTTGGGCCCTGCAGATGTGCTGGCTGCTGGGCTGGTATGCCGCCAATGGCAGGCTGTGTCCCGGGATGAGTTCTTATGGAAGGAGCAATTCTACCGCTACTACCAGGTGGCTCGAGATGTGCCCCGCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095:ENSMUST00000015239:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGGTCCATCGATGCC
R:
GCACATCTCGAGCCACCTG
Band lengths:
326-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types