BtaINT0061641 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106287254-106288518:+
Coord C1 exon
chr11:106287254-106287322
Coord A exon
chr11:106287323-106288302
Coord C2 exon
chr11:106288303-106288518
Length
980 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GGGTTGTGCGTGTGTTTCAGGGC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GGAAGAGGGTCCGTGGGCTGAGGCCGGGCGCCGGGGCGGGGGCCGCGCATCCGGGCGGAGGCGGCCGCG
Seq A exon
GTGAGTGCGCCCGCCCGGGGAACGTCGTCACGGCGGCGTCCGGACCCCGGCCCGGGCCCTCACAGCCTAGCCCGGAGAGCGTCGTTACCCCGCCCCGACCCCTGGTCCGGCCCCCCAACTCCCCGGACGCGTCCTTGGCCAATGAATGAATCGCCGAGGCCGCCGGGACTGGGGTGGCGGGGCCCGAGCCGCGGCCCCGCCCCCGGCAGCCCCTCAGGGAGGGTGGGGGGCGCTGGGCGGCCCCGCTCCCGCCCCGCCCCGCCCCGCCCGGCCGTCTCCGCGCTGGCCTGCGGTCAACCTGGCAGGGTCCCCCAGGCCAAAGGGCAGAGGTCAGGGCCGGCTGGTGTTCCTGGCGGCGTGTGGGACGGGCGGCCGGGCCGGCCCTCGTCCCGCCGGCCCCGAGTCTCTCCTGGGAAGGACCTCTATCCCATGCTGACCGCTCCGAAGCCTGGGGCAGCAAGGTCAGAGATGGTGCGCAGGGGTCACCGACCCTTCCCTTCTGGGCCTCGGAGCGGTCACCAGCTCTGGCAACCAGATGTCTCCCCGGGATCCTATGGGGGGGAAGTCAGAGGGCCCCACCCAGAAAGCCTGTCCTCCTGAGGAGGGGAACTTTTGGGGTGACAGTGGGTCCCCCGAGCCCATGGCCACTCCAGCTCCAGCTGGACCAGGCCGGGAAGCTGCGTGTTCAGGGACTCACTGGGCCTTGGGGCACCTCAGGAGTGCAGGGTCCGAGGAGCACGGCTGTGTAGGGGGGCTTGGGGAAGCTCTTGGCTCCTTGGCCGTGCAGGCAGTGCCAGCCGGCCCTCCGCACATGCTCAGTCCAATATAATGCCCAGCAGGGCAGTTGGTGGGGCAGGAGGAGCATCCACTGGGCTGGCTCGGCTCCGCTCAGCCCCGGGCTCCTGTGCCTCTCCTTGGACCTGGGGGCCAGTGTCCTCCCTGGTCCCACCGGCAGCTAAGGGGTTGTGCGTGTGTTTCAG
Seq C2 exon
GGCCGCCGGGGCAGAATGTCACGATGGACGAGGGGGAAACACCCCTGCTTCCAGACAGCCTGGTCTACCAGATCTTCCTGAGCCTGGGCCCGGCCGACGTGCTGGCCGCCGGGCTGGCGTGCCGCCAGTGGCAGGCTGTGTCCAGGGACGAGTGCCTGTGGAGGGAGCAGTTCTACCGCTACTACCAAGTGGCCCGAGATGTGCCCCGGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515:ENSBTAT00000013887:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGGTCCGTGGGCT
R:
ACATCTCGGGCCACTTGGTAG
Band lengths:
270-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development