RnoINT0060103 @ rn6
Intron Retention
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2727254-2728042:+
Coord C1 exon
chr3:2727254-2727356
Coord A exon
chr3:2727357-2727826
Coord C2 exon
chr3:2727827-2728042
Length
470 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CAGCCACTGGTGGGTTTCAGGAC
3' ss Score
5.52
Exon sequences
Seq C1 exon
CTCTCTCCTGAAGCCACACGACAGCCATTGGGCAGCAGGAGCCCCTTCTCAGAAGAAAGTTAGCCCTGACCTGAAGTCCTGTGGCAGCAAGGTCAAAGACAGG
Seq A exon
GTGAGGTGCTAAAACTTGGACCTGCCAGTTTGGGCAGCCCAGACCTGTTTGCCTGCCTTGGTGCTCACATGTCTCTCTGGGCCCTGGAGCATTAGGGAAGGTGTCAAAGGCCCCCCACCTGAAAGGTATAAAGATGGGGCTGCACCCCCACCTTGCAGGTTGTATCTGGCCTAGTAGTACTCAGGTGCTTGCTGTCTGGCGCCCCTGGAGAATGTGAGGTGGTGCAACATTACCGTCTGGGTGCTTCAAGAAGTGTTGGGTGTGTGGTGGGGCAGTGCTACTTGTACACACACACAGGGACACACACACATCCCCCCTCCCCCTGCACATGCTCAGTGCAATGGAATTCTCGGCTGGGCAGTTGGTGGGGCTGGCTAGGACTGCCATGTCTGGAACCCCAGACCATCAGTCTCTCCCTGGGGTTGGGGGTGAGGAGGCCTGGGTTGAGAGCAGCCACTGGTGGGTTTCAG
Seq C2 exon
GACCGTCTGGGCAGAATGTCACGATGGATGAGGGGGGCATGCCCCTGCTCCCCGACAGCCTGGTCTACCAGATCTTCCTGAGCTTGGGCCCTGCAGATGTGCTGGCTGCTGGGCTGGTGTGCCGCCAGTGGCAGGCTGTCTCCCGGGACGAGTTCCTATGGAGGGAGCAGTTCTACCGCTACTACCAGGTGGCTCGCGATGTGCCCCGCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674:ENSRNOT00000034089:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCCTGAAGCCACACGA
R:
ATCGCGAGCCACCTGGTAG
Band lengths:
303-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]