RnoEX0035476 @ rn6
Exon Skipping
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2727254-2728393:+
Coord C1 exon
chr3:2727254-2727356
Coord A exon
chr3:2727827-2728042
Coord C2 exon
chr3:2728236-2728393
Length
216 bp
Sequences
Splice sites
3' ss Seq
CAGCCACTGGTGGGTTTCAGGAC
3' ss Score
5.52
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTCTCTCCTGAAGCCACACGACAGCCATTGGGCAGCAGGAGCCCCTTCTCAGAAGAAAGTTAGCCCTGACCTGAAGTCCTGTGGCAGCAAGGTCAAAGACAGG
Seq A exon
GACCGTCTGGGCAGAATGTCACGATGGATGAGGGGGGCATGCCCCTGCTCCCCGACAGCCTGGTCTACCAGATCTTCCTGAGCTTGGGCCCTGCAGATGTGCTGGCTGCTGGGCTGGTGTGCCGCCAGTGGCAGGCTGTCTCCCGGGACGAGTTCCTATGGAGGGAGCAGTTCTACCGCTACTACCAGGTGGCTCGCGATGTGCCCCGCCACCCAG
Seq C2 exon
CGGCCACATCCTGGTATGAGGAGTTCCGGCGGCTCTATGACATGGTGCCCTGTGTGGAGGTGCAGACACTGAAGGAGCACACCGACCAGGTCCTGCACCTCAGCTTCTCCCACTCGGGGTACCAGTTTGCCTCCTGCTCCAAGGACTGCACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674-'2-4,'2-0,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF129372=F-box-like=WD(100=72.3)
C2:
PF0040027=WD40=PU(89.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCCTGAAGCCACACGA
R:
TTCACTGTGCAGTCCTTGGAG
Band lengths:
260-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]