RnoEX0035477 @ rn6
Exon Skipping
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2727827-2728779:+
Coord C1 exon
chr3:2727827-2728042
Coord A exon
chr3:2728301-2728393
Coord C2 exon
chr3:2728679-2728779
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTGTGGAGGTGCAGACA
3' ss Score
-2.03
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GACCGTCTGGGCAGAATGTCACGATGGATGAGGGGGGCATGCCCCTGCTCCCCGACAGCCTGGTCTACCAGATCTTCCTGAGCTTGGGCCCTGCAGATGTGCTGGCTGCTGGGCTGGTGTGCCGCCAGTGGCAGGCTGTCTCCCGGGACGAGTTCCTATGGAGGGAGCAGTTCTACCGCTACTACCAGGTGGCTCGCGATGTGCCCCGCCACCCAG
Seq A exon
ACACTGAAGGAGCACACCGACCAGGTCCTGCACCTCAGCTTCTCCCACTCGGGGTACCAGTTTGCCTCCTGCTCCAAGGACTGCACAGTGAAG
Seq C2 exon
CCTCTCTGGTACAGATCTGGAACAATGACCTGACCATCTCTCTGCTGCACAGTGCAGATATGAGGCCATACAACTGGAGTTACACCCAGTTCTCCCAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674-'4-6,'4-5,5-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=72.3)
A:
PF0040027=WD40=PU(89.7=66.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCCTATGGAGGGAGCA
R:
ACTGGGAGAACTGGGTGTAACT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]