GgaEX6014690 @ galGal3
Exon Skipping
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:897274-901046:+
Coord C1 exon
chr17:897274-897521
Coord A exon
chr17:900115-900272
Coord C2 exon
chr17:900872-901046
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTGCTTGTGTTCCAGCTG
3' ss Score
9.88
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCGGGCCGGGCCCGAGCTGAGCGCCGCTCGCTCGCGGGTGCAGCGGCAGGATGACACGATGGCCGCGGGCGGCCCCCTGCTCCCGGACAGCGTGCTCTTCGAGATCTTCCTGTACCTGGACCACGCCGACGTGCTCGCGGTGGGCCTCGTGTGCCGGCAGTGGCGCGCCGTGGCCCGCGACGAATTCCTGTGGAAGGAGCTCTTCTACCGCTACTACCGCGTCTCCCGGGACGTGCCCCGGCACCCAG
Seq A exon
CTGCTGTCTCCTGGTATGATGAGTTCCAGAGGCTCTACGACACCATCCCTTGCATTGAAGTGCAGGCCCTGAAGGAGCACAATGACCAGGTGTTGCACCTCAGCTTCTCTCACTCGGGCTGTTTGTTTGCATCGTGCTCCAAAGACTGTACTGTTAAG
Seq C2 exon
ATCTGGAGCAATGAGTTGGACATCTCCCTGCAGCACAGCTCCAACATGAGGCCGTACAACTGGAGCTACACACAGTTCTCCCAGTTCAACTCCGATGACTCCCTCCTTCTGGTATCAGGTGTCTTTGTGGGGCCTCACAACTCCTCATCAGGAGAGATTGCCGTAATCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966-'0-3,'0-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=67.6)
A:
PF0040027=WD40=PU(89.7=66.0)
C2:
PF0040027=WD40=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGTACCTGGACCACG
R:
AGGAGGGAGTCATCGGAGTTG
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]