DreEX0032426 @ danRer10
Exon Skipping
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53826402-53830989:-
Coord C1 exon
chr5:53830794-53830989
Coord A exon
chr5:53829857-53830014
Coord C2 exon
chr5:53826402-53826585
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTGCATGTTTGTAGCGG
3' ss Score
5.11
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GATGTTAGAATGGCAAGTGGCCCTGGCTTGCCGGACAGTCTGGTGCTGGAAATCTTCCTGCATCTCCCTCATAAGGCGGTGTTGAGCGCTGGACTCACTTGCCATCAGTGGTTTGCAGTGTCTCGGGATGAGTTTCTCTGGAAGGAGCTTTTCTACAGCTACTATCGCATCCCACGCACTGTGCCTCGACACCCAG
Seq A exon
CGGCTGTGTCGTGGTACAGGGAGTTCAAGCGGCTATATGACTGCATCCCCTGTGTAGAGGTTCAGACTTTAAAGGAGCATCATGATCAGGTGCTGCATTTAGCCTTCTCTCACCGCGGCCATCGATTTTCCTCCTGTTCCAAAGACTGCACTGTTAAG
Seq C2 exon
CTTTGGGACACCGAGCAGTCCGATGGCACCATCTCTCTGGTTCACAGCTGCAGCATGCGACAGTATAACTGGGGCTACACTCAGTTCTCTCAGTTTAACGCTGATGACACACTCCTGCTGGTGTCAGGGGTCTACCTGGGCCCACATCACTCCTCCGCTGGAGAGATTGCAGTCTTCAGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=73.0)
A:
PF0040027=WD40=PU(89.7=66.0)
C2:
PF0040027=WD40=PD(5.1=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTCATAAGGCGGTGTT
R:
CACCAGCAGGAGTGTGTCATC
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]