BtaEX6047651 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106288303-106289262:+
Coord C1 exon
chr11:106288303-106288518
Coord A exon
chr11:106288659-106288816
Coord C2 exon
chr11:106289088-106289262
Length
158 bp
Sequences
Splice sites
3' ss Seq
GACCCCCCCACCCCCGACAGCGG
3' ss Score
6.36
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCCGCCGGGGCAGAATGTCACGATGGACGAGGGGGAAACACCCCTGCTTCCAGACAGCCTGGTCTACCAGATCTTCCTGAGCCTGGGCCCGGCCGACGTGCTGGCCGCCGGGCTGGCGTGCCGCCAGTGGCAGGCTGTGTCCAGGGACGAGTGCCTGTGGAGGGAGCAGTTCTACCGCTACTACCAAGTGGCCCGAGATGTGCCCCGGCACCCAG
Seq A exon
CGGCCACGTCCTGGTTCGAGGAGTTCCGCCGCCTCTATGACGCAGTGCCCTGCGTGGAGGTGCAGACGCTCCGGGAGCACACCGACCAAGTCCTGCACCTCAGCTTCTCCCACTCAGGCTACCAGTTTGCTTCCTGCTCCAAGGACTGCACAGTGAAG
Seq C2 exon
ATTTGGAACAACGACCCGACCATCTCGCTACTGCACAGCGCGGACATGCGGCCCTACAACTGGAGCTACACCCAGTTCTCCCAGTTTAACCAGGACGACTCGCTGCTGCTGGCGTCTGGGGTGTTCCTAGGGCCCCACAACTCCTCCTCAGGCGAGATCGCGGTCATCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515-'5-7,'5-1,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=72.3)
A:
PF0040027=WD40=PU(89.7=66.0)
C2:
PF0040027=WD40=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACCCCTGCTTCCAGAC
R:
ACTGGGTGTAGCTCCAGTTGT
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]