HsaEX6064121 @ hg19
Exon Skipping
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:13613]
Coordinates
chr9:139837801-139839102:-
Coord C1 exon
chr9:139839046-139839102
Coord A exon
chr9:139838343-139838558
Coord C2 exon
chr9:139837801-139837958
Length
216 bp
Sequences
Splice sites
3' ss Seq
CAGCCGTTGGTGGGTTTCAGGGC
3' ss Score
5.89
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGAAGCGGGTCCGGGTCGCGCAGGGCGGGGGCGGCGCAGCGGGCGGAGGCGGCCGTG
Seq A exon
GGCCGCCTGGGCAGAATGTCACGATGGACGAGGGCGGCACGCCCCTGCTCCCCGACAGCCTGGTCTACCAGATCTTCCTGAGCCTGGGCCCGGCCGACGTGCTGGCCGCCGGGCTGGTGTGCCGCCAATGGCAGGCCGTGTCGCGGGACGAGTTCCTGTGGAGGGAGCAGTTCTACCGCTACTACCAGGTGGCCCGCGACGTGCCCCGACACCCAG
Seq C2 exon
CGGCCATGTCCTGGTACGAGGAGTTCCAGCGGCTGTATGACACGGTGCCCTGCGTGGAGGTGCAGACGCTGCGGGAACACACAGACCAGGTCCTGCACCTCAGCTTCTCCCATTCCGGGTACCAGTTCGCGTCCTGCTCCAAGGACTGCACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF129372=F-box-like=WD(100=72.3)
C2:
PF0040027=WD40=PU(89.7=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)