BtaEX6047652 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106287254-106288816:+
Coord C1 exon
chr11:106287254-106287322
Coord A exon
chr11:106288303-106288518
Coord C2 exon
chr11:106288659-106288816
Length
216 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTGCGTGTGTTTCAGGGC
3' ss Score
9.71
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GGAAGAGGGTCCGTGGGCTGAGGCCGGGCGCCGGGGCGGGGGCCGCGCATCCGGGCGGAGGCGGCCGCG
Seq A exon
GGCCGCCGGGGCAGAATGTCACGATGGACGAGGGGGAAACACCCCTGCTTCCAGACAGCCTGGTCTACCAGATCTTCCTGAGCCTGGGCCCGGCCGACGTGCTGGCCGCCGGGCTGGCGTGCCGCCAGTGGCAGGCTGTGTCCAGGGACGAGTGCCTGTGGAGGGAGCAGTTCTACCGCTACTACCAAGTGGCCCGAGATGTGCCCCGGCACCCAG
Seq C2 exon
CGGCCACGTCCTGGTTCGAGGAGTTCCGCCGCCTCTATGACGCAGTGCCCTGCGTGGAGGTGCAGACGCTCCGGGAGCACACCGACCAAGTCCTGCACCTCAGCTTCTCCCACTCAGGCTACCAGTTTGCTTCCTGCTCCAAGGACTGCACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515-'1-1,'1-0,5-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF129372=F-box-like=WD(100=72.3)
C2:
PF0040027=WD40=PU(89.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGGTCCGTGGGCT
R:
TTCACTGTGCAGTCCTTGGAG
Band lengths:
225-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]