DreEX0032425 @ danRer10
Exon Skipping
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53829857-53835099:-
Coord C1 exon
chr5:53835009-53835099
Coord A exon
chr5:53830794-53830989
Coord C2 exon
chr5:53829857-53830014
Length
196 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTGCTCTCTCTCAGGAT
3' ss Score
10.2
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGGGATTGAGCTAGTCGCATAACCGGAGCTGAAACAATTTGAAGATAAATTAAAACTAGCTCTTTATACCACTAGCTGTGGCCTTTGGCAG
Seq A exon
GATGTTAGAATGGCAAGTGGCCCTGGCTTGCCGGACAGTCTGGTGCTGGAAATCTTCCTGCATCTCCCTCATAAGGCGGTGTTGAGCGCTGGACTCACTTGCCATCAGTGGTTTGCAGTGTCTCGGGATGAGTTTCTCTGGAAGGAGCTTTTCTACAGCTACTATCGCATCCCACGCACTGTGCCTCGACACCCAG
Seq C2 exon
CGGCTGTGTCGTGGTACAGGGAGTTCAAGCGGCTATATGACTGCATCCCCTGTGTAGAGGTTCAGACTTTAAAGGAGCATCATGATCAGGTGCTGCATTTAGCCTTCTCTCACCGCGGCCATCGATTTTCCTCCTGTTCCAAAGACTGCACTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF129372=F-box-like=WD(100=73.0)
C2:
PF0040027=WD40=PU(89.7=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATTGAGCTAGTCGCATA
R:
ACAGTGCAGTCTTTGGAACAGG
Band lengths:
245-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]