RnoALTD0011481-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2726697-2728042:+
Coord C1 exon
chr3:2726697-2726797
Coord A exon
NA
Coord C2 exon
chr3:2727827-2728042
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CAGCCACTGGTGGGTTTCAGGAC
3' ss Score
5.52
Exon sequences
Seq C1 exon
GGGGCTCTGGGCGTCGAGTCTGGCTCCTCTATAAAGACTCGGAGGCGGGGACTAGAGCGGCGGCGGAAGCCGGGCGCAGCGCAGCGGGCAGAGGCACCGCG
Seq A exon
NA
Seq C2 exon
GACCGTCTGGGCAGAATGTCACGATGGATGAGGGGGGCATGCCCCTGCTCCCCGACAGCCTGGTCTACCAGATCTTCCTGAGCTTGGGCCCTGCAGATGTGCTGGCTGCTGGGCTGGTGTGCCGCCAGTGGCAGGCTGTCTCCCGGGACGAGTTCCTATGGAGGGAGCAGTTCTACCGCTACTACCAGGTGGCTCGCGATGTGCCCCGCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGGGCGTCGAGTC
R:
CACATCGCGAGCCACCTG
Band lengths:
302-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]