MmuALTD0007331-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62602628-62615738:-
Coord C1 exon
chr2:62615584-62615738
Coord A exon
chr2:62615339-62615583
Coord C2 exon
chr2:62602628-62602827
Length
245 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TGTTTTTTTATCCAATCCAGCTC
3' ss Score
7.5
Exon sequences
Seq C1 exon
ACAACGACACTAATTGGTCTTTTGAAGACTGCACGACTCCTGCGTCTTGTGCGCGTAGCCAGGAAACTGGACCGATACTCAGAATATGGTGCGGCTGTTCTAATGCTCTTGATGTGCATATTTGCCCTGATTGCCCACTGGCTGGCTTGCATCTG
Seq A exon
GTATGCGATTGGGAATGTAGAGAGGCCCTATCTGACTGACAAAATTGGATGGTTGGATTCCTTAGGAACACAAATTGGGAAACGTTACAATGACAGTGACTCGAGTTCTGGACCGTCCATTAAAGACAAATACGTCACGGCACTTTATTTTACCTTCAGCAGTCTAACCAGTGTAGGATTTGGAAATGTGTCTCCTAACACCAATTCGGAGAAAATCTTTTCCATTTGTGTCATGTTGATTGGCT
Seq C2 exon
CTCTAATGTATGCGAGCATTTTTGGGAACGTTTCTGCAATTATTCAAAGACTGTACTCAGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTAAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTTTGAGGCAACGGCTTGAGGAGTATTTCCAGCATGCATGGACTTACACTAACGGCATAGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-13-10,14-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(63.3=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGACTGCACGACTCCTG
R:
GCTGGAAATACTCCTCAAGCCG
Band lengths:
296-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: