RnoALTD0015133-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48736095-48749566:-
Coord C1 exon
chr3:48749412-48749566
Coord A exon
chr3:48749167-48749411
Coord C2 exon
chr3:48736095-48736294
Length
245 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTGTTTTTTATCCAATCCAGCTC
3' ss Score
7.41
Exon sequences
Seq C1 exon
ACAACAACACTAATTGGTCTTTTGAAGACTGCACGTCTCCTGCGTCTTGTGCGTGTAGCCAGGAAACTGGACCGATACTCAGAATATGGTGCCGCTGTTCTAATGCTCTTGATGTGCATATTTGCCCTGATTGCCCACTGGCTGGCTTGCATCTG
Seq A exon
GTATGCGATTGGGAATGTAGAGAGGCCCTATCTGACTGACAAAATTGGATGGTTGGATTCCTTAGGAACACAAATTGGGAAACGTTACAATGACAGTGACTCGAGTTCTGGACCGTCCATTAAAGACAAATACGTCACGGCACTTTACTTTACCTTCAGCAGTCTAACCAGTGTAGGATTTGGAAATGTGTCTCCTAACACCAATTCGGAGAAAATCTTTTCCATTTGTGTCATGTTGATTGGCT
Seq C2 exon
CTCTAATGTATGCGAGCATTTTTGGGAATGTTTCTGCAATTATTCAAAGACTGTACTCGGGAACTGCCAGGTACCACATGCAGATGCTGAGAGTGAAAGAGTTCATTCGCTTCCACCAAATCCCCAACCCTCTGAGGCAACGGCTTGAGGAGTATTTCCAGCACGCATGGACGTACACTAACGGCATTGACATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528-6-9,7-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(63.3=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.8=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTCTCCTGCGTCTTGTG
R:
TTAGTGTACGTCCATGCGTGC
Band lengths:
305-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]