MmuEX0042199 @ mm9
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30201219-30201973:-
Coord C1 exon
chr2:30201873-30201973
Coord A exon
chr2:30201579-30201593
Coord C2 exon
chr2:30201219-30201459
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCTCGTGCTGCCAGCTC
3' ss Score
8.2
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGAACCACCTTCGCTGCCTCCATGAGTTCGTCAAGTCTCAGACAACCTACTATGCACAGTGCTACCGCCACATGCTGGATCTGCAGAAACAGCTAGGCAG
Seq A exon
CTCCCAGGGTGCCAT
Seq C2 exon
ATTTCCAGGCACCTTCGTGGGCACCACAGAGCCTGCCTCCCCACCCCTGAGCAGCACCTCACCTACCACCACTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGTCTTGGCCCCTCCAGAAGAGGCAGCCCTCTGCCTGGAGGAGGTGGCTCCCCCAGCCAGTGGGACTCGAAAGGCCCGGGTGCTCTACGACTACGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.372
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.0=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=22.2)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATCTGCAGAAACAGCT
R:
GCAGTGGTGGTAGGTGAGGT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types