DreEX0066009 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31049535-31058152:-
Coord C1 exon
chr5:31058052-31058152
Coord A exon
chr5:31057786-31057800
Coord C2 exon
chr5:31049535-31049781
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTTCTTTTCTCAGTGC
3' ss Score
9.94
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTAAACCACCTGCGCTGTCTGCATGAGTTTGTGGAGGCTCAGGCTGCTTATTACGCTCAGTGTCACAGGCACATGCAGGACCTTCAGAAAGAACTGAGCAG
Seq A exon
TGCAAACGGAGATAC
Seq C2 exon
GTTTCCTAATGCTTTTGCTGTGAACGCCTCCACATCAGGGGTGTCAGCAGGCCCTTCTCCCCTTTCCACTGGCACACAACCTGGGCCTTCATCACCCAGTCGTCCACCAAACCCCCCCAATGCGCTGGAGTCCAACACACTGAAGATTGAAGAGGTCAAGCCTCCTGCCACTGGCACCCGCAAGGCTAAAGTGCTGTATGACTACGATGCTGCAGATACAAGTGAACTTTCTCTTCTCGCAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.400 C2=0.651
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(13.4=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=21.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATGCAGGACCTTCAGAA
R:
AGGTTGTGTGCCAGTGGAAAG
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]