RnoEX0080506 @ rn6
Exon Skipping
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8910086-8910839:-
Coord C1 exon
chr3:8910739-8910839
Coord A exon
chr3:8910446-8910460
Coord C2 exon
chr3:8910086-8910326
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCTTGTGCTGCCAGCTC
3' ss Score
8.2
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGAACCACCTTCGCTGCCTCCATGAGTTCGTCAAGTCTCAGACCACCTACTATGCACAGTGCTACCGCCACATGCTGGATCTGCAGAAACAGCTAGGCAG
Seq A exon
CTCCCAGGGTGCCAT
Seq C2 exon
ATTTCCAGGCACCTTCGTGGGCACTACAGAGCCTGCCTCCCCACCCCTGAGCAGCACCTCACCCACCACCACTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGGCTTGGCCCCTCCAGAAGAGGCAGCACTGTGCCTGGAGGAGGTGGCTCCACCAGCCAGCGGGACTCGAAAGGCCCGGGTGCTCTACGACTATGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295-'19-27,'19-25,23-27
Average complexity
S
Mappability confidence:
100%=86=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.9=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF146041=SH3_9=PU(35.3=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCAAGTCTCAGACCACCT
R:
CTCTGTAGTGCCCACGAAGGT
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]