HsaEX0058029 @ hg19
Exon Skipping
Gene
ENSG00000148341 | SH3GLB2
Description
SH3-domain GRB2-like endophilin B2 [Source:HGNC Symbol;Acc:10834]
Coordinates
chr9:131771385-131772150:-
Coord C1 exon
chr9:131772050-131772150
Coord A exon
chr9:131771732-131771746
Coord C2 exon
chr9:131771385-131771625
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTTGTGCTGCCAGCTC
3' ss Score
8.11
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTGAACCACCTGCGCTGCCTCCACGAGTTCGTCAAGTCTCAGACAACCTACTACGCACAGTGCTACCGCCACATGCTGGACTTGCAGAAGCAGCTGGGCAG
Seq A exon
CTCCCAGGGTGCCAT
Seq C2 exon
ATTTCCCGGCACCTTCGTGGGCACCACAGAGCCCGCCTCCCCACCCCTGAGCAGCACCTCACCCACCACTGCTGCGGCCACTATGCCTGTGGTGCCCTCTGTGGCCAGCCTGGCCCCTCCGGGGGAGGCCTCGCTCTGCCTGGAAGAGGTGGCCCCCCCTGCCAGTGGGACCCGCAAAGCTCGGGTGCTCTATGACTACGAGGCAGCCGACAGCAGTGAGCTGGCCCTGCTGGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.304
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=22.2)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATGCTGGACTTGCAGAA
R:
CATAGTGGCCGCAGCAGTG
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)