BtaEX0032344 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99508075-99508819:-
Coord C1 exon
chr11:99508719-99508819
Coord A exon
chr11:99508449-99508463
Coord C2 exon
chr11:99508075-99508315
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTCACGCTGCCAGCTC
3' ss Score
6.38
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGAACCACCTTCGCTGCCTGCACGAGTTCATCGAGTCTCAGACCACGTACTATGCCCAGTGCTACCGCCACATGCTGGACCTCCAGAAGCAGCTGGGCAG
Seq A exon
CTCCCAGGGAGCCAT
Seq C2 exon
ATTCCCAGGCACCTTTGTGGGCACCGCCGAGCCCGCCTCCCCACCCCTCAGCAGTACCTCGCCCACCACCACCGCGGCCACGATGCCCATGGGGCCCTCCGTGGCCGACCTGGCCCCTCCGGGGGAGGCTGCTCTCCGCCTGGAGGAGGTGGCCCCACCTGCCAGCGGAACCCGGAAAGCCCGCGTTCTCTATGACTACGAGGCGGCCGACAGCAGCGAGCTGGCCCTGCTGGCCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.509
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.0=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=22.2)
Main Inclusion Isoform:
ENSBTAT00000014049fB6342
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTATGCCCAGTGCTACCG
R:
GAGGTACTGCTGAGGGGTGG
Band lengths:
114-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development