MmuINT0143129 @ mm9
Intron Retention
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30201219-30201973:-
Coord C1 exon
chr2:30201873-30201973
Coord A exon
chr2:30201460-30201872
Coord C2 exon
chr2:30201219-30201459
Length
413 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TGAGACACCCTCCTCTCTAGATT
3' ss Score
5.68
Exon sequences
Seq C1 exon
GTGAACCACCTTCGCTGCCTCCATGAGTTCGTCAAGTCTCAGACAACCTACTATGCACAGTGCTACCGCCACATGCTGGATCTGCAGAAACAGCTAGGCAG
Seq A exon
GTGTGGCTGGACCCAGGTCTCTGAGGCCCCCTATCTCCCAGACCCAGTGAGTGGCCCAATGCTTCTGGCCAAGGGCCTTCTCTTCTGAGCTCAGAAAACCTCATGATACATGAGGTTGGACTGGAGGCTCTGCCTAGAACCTCATGTGGGCACCTCATGTGGTGAGATCAGAGTCTCCAGGGGCTCACAGTGGTTTCTTTGTGCCAGGGAGGTGGGCAGGGACAAGCAGGTGGGACTATCTCAGCTTCCTCTATTTTGTTTTTTCCCTCGTGCTGCCAGCTCCCAGGGTGCCATGTAAGTTATTGAGGGTTGGGCCTCCTTGTGTGTAAAATGGGCCAGTGTCTGGTCTGTCTTGTAGAGTATGTGGGGCTCTCACAGGTTAGTGATGGCTGCTGAGACACCCTCCTCTCTAG
Seq C2 exon
ATTTCCAGGCACCTTCGTGGGCACCACAGAGCCTGCCTCCCCACCCCTGAGCAGCACCTCACCTACCACCACTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGTCTTGGCCCCTCCAGAAGAGGCAGCCCTCTGCCTGGAGGAGGTGGCTCCCCCAGCCAGTGGGACTCGAAAGGCCCGGGTGCTCTACGACTACGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-Sh3glb2:NM_139302:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.372
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.0=100)
A:
NA
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACCTTCGCTGCCTC
R:
AGCAGGGCCAGCTCACTG
Band lengths:
330-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: