RnoINT0134718 @ rn6
Intron Retention
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8910086-8910460:-
Coord C1 exon
chr3:8910446-8910460
Coord A exon
chr3:8910327-8910445
Coord C2 exon
chr3:8910086-8910326
Length
119 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGAGACACCCTTATCTCTAGATT
3' ss Score
4.93
Exon sequences
Seq C1 exon
CTCCCAGGGTGCCAT
Seq A exon
GTAAGTTATTGAGGGTTGGGCCTCCTTGTGTGTGAAATGGGCCAGTGTCTCTGGTCTGTCTTGTAGAGCATGTGGGGCTCACAGGTTAGCACTGGCTGCTGAGACACCCTTATCTCTAG
Seq C2 exon
ATTTCCAGGCACCTTCGTGGGCACTACAGAGCCTGCCTCCCCACCCCTGAGCAGCACCTCACCCACCACCACTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGGCTTGGCCCCTCCAGAAGAGGCAGCACTGTGCCTGGAGGAGGTGGCTCCACCAGCCAGCGGGACTCGAAAGGCCCGGGTGCTCTACGACTATGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295:ENSRNOT00000023527:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.370
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(0.1=0.0)
A:
NA
C2:
PF146041=SH3_9=PU(35.3=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]