DreINT0134435 @ danRer10
Intron Retention
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31049535-31057800:-
Coord C1 exon
chr5:31057786-31057800
Coord A exon
chr5:31049782-31057785
Coord C2 exon
chr5:31049535-31049781
Length
8004 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
CTTTAACTGTGTGGTTTCAGGTT
3' ss Score
9.09
Exon sequences
Seq C1 exon
TGCAAACGGAGATAC
Seq A exon
GTGAGTAACTTTTACCATCATCTGAAAAAGGGAAGAGTTTACAGACAGTGTTTAAGCAATTTTGTTCATGTGACTGAGGGATGTAAAGGCTTTTGACTTTCATGTCCTGTCTGTCTTATATGTGAGCAACAGCTTATGTTCCCCTTCGTGGGGAACTCCAGCACTATAAGTGGATTTGATGTTCTAAATCCGTGTATGGGAGATTCGGTTCAGAAGCTACTCGTCTGAAAGAGTATTGAACGGGCCAATTAATAATGAATTGGCAGCGCAAGCCTGCGCAGGTGTGCAGCATATGCAATCAACTGAGTATATAAGCACACCTGGCGCCAGCAGACGCTATCCTTTTTGCTTCAGAGACTTTTCTGATCAAGCTTCATGAGGGTTCCTCCTGCTGTCTACAGCCACTTCGAGCGAACGAGTGTCTCCCGGTCCAGAGCGAATCCACGCAGCGGCAGACGGTCGAGCTGGGTTTCTCCCTTGCCTGGCGTCCCTTTGGGTCCGGTCCTCCAAGAGCGGTGCGTATTGCTGCAAAGCATCCTAAAAGAGCAACACAGTCGTGCAGCACGTCCTTCTCAGGAAGACGCTCCGACTGTGCGTTTCTGGTTGCGGGGTTTCCTGGCTCCGGATGATGGGCACGTTCACTGCATTACATGTTTGGGGGTCCAGCATGTTAATGTGGTGCTCGGGGGCGGTTCATGTCGTCACTGCGATGCCATGACCGTCACGCAGTTGAGATCTAGGCTAGCTTTCGTAAGAGAGCGAGCCACACTAGTCGCCTCCTGCTCTGCAGCGGGCGCTCGGGCAGATCTGAGGGTTCCAGCGAGAGATAATCCGCCGCCTAAGGGCTCGCGGACCTCTCGCTCCTCCAAGCGCTCCATCCAAGCTTCGGGTACTGGGAGTGATCCGTCTAATCAGATGGTAGCTTTCACGCTCGCTGACACCGGAGATCAGATGTCCCCCGCGGCATCGGAGGGTGGGCTTTCATTGTCCGACGATGATCCGGACCCGCCTGCCCCCTTCGGGCAGGTGAGCGCTGTCAAAACGGATACTGAAACGGACGTGTTAGCCGTGCTTTCCCGGGCTGCTTCGGCCGTGGGTTGGAGATGGTTTTTCCCCCAGCTCCGTGGCCTGACTGACTAGAGGGGCGTTCCCTTCTTCCCGATGACGCACAGTAGGCTCACGCGGTCTTAAAGAGCACTTTTTTCTGCTAGTGCTGCGTGTCCCTCCACCCTCACCACTCTTGGTGGTGGAGCGGCCAGGGAGTATGTGGCAACTCCTCAGGTTGAGTGCGCTATGGCGGTTAGTCCGCGCGGCGCCTCTTCTTGGTGGGGTCCGCCTCGTCTCCCATCCAAAGCCTGTAAGTTTCTGCTCCCCGGAGTCAGAGCTTGCAAAGCTACGGACCAGGCTGCTTCCGCCTTGCAAGCAATAGCCACCTACCAGCGCTACCAAGCGCAGGCGCTAGCCGAGCTGCACGAGGGTGGGTCCAACCCAGGCTTATGAGCTTCGCACCGCAGCCGACTAAGCTCCTCGGACTACTGAGTCCGCTGCGTGTGCTTTGGGGAGGACGATGTCCACACTAGTGATCCAGGAGCGCCACCCCTGACTAGAACTTGGCTGGTATGCGCGAAGTCGACAAAGTCCGCTTTCTTGACTTGTCCATATCCCAAGCTGGTCGGCGACACTGTCTGCAAATTCACCCAGGAATTCGAGGCAGTGAGAGAGCAGTCTGATGGGTGATGTCTTATCAGCGGATCCGTAGCCCGCTCCGCCCGCCGTGCCATCCATACCTGCTCCTCGCCGAAGGTGCCCGCCTACGAGAGCTGCACCGCCCCCGCACACGCCTCTGGCGAAGCGAGCGCGTCAAGCACCTCAGAAGCAGGCAGCTCCCCCTGCCCAGAATGCCGCTAAGTCTGGCAACGGACCGCGAAGCGTCCCTGGGACAGGTAATCTAGAGAAGAGGGAACTTGCTCTTCCCCGCTGGAGGGCGGGGCGCCATTTTCAACGGCACCTTTTACTGCCATGAAATGAAAGGGCACTTTTTCACTTCCCCGGATGTGACAGCCCGAAATCTGCCAGTCTGAGACACTGTGCTCTCTAGCTCGCAGGTTCGGTGCGCTTTGCCAGTGGCTCACAAGCACCGCAAGCCTGCCCTGCGGCTCACGGGTGCTGGGGGGACGGTCTTCCTTCTCCCAGCCCCCAAGCCCCTTTTCCGGAGTCAGGGTGCGGAGCCAGAGCGAATCGCTCTCCTCCAGCTCTTCTGTGGGACCCTCGCGCTCCCCGGATCAGCACACCCGCTCCGCGCTGCCCCTCCACGGGTACGTCAACGATTGCTGCGATGACGTCATTAGCGAGGGCTCTGCCAGGTTCACGGGCATGTATTTCACCAGGGTCAATCCCCTGTCCGCCCCTGTCTTGCGAGAGGAGATTGCTGCCCTCCTGGCGAAGAGTGCAATCGAGCCGGTACCTCCAGCCGAGATGGAGAGCGGGTTTTACAGCCCGTACTTCATCATACCCAAAAAGAGCGGTGGGTCACGGCCAATCCTAGATCTGCGCGTTTTGAATCGCTGCCTTCACAAGCTGTCGTTCAGAATGCTTACGCAGAGGCGCATCCTCCGATGCGTTCGTCCTCAGGATTGGTTTGCAGCCATAGACCTGAAGGACGCGTATTTTCATGTCTCCATTCTTCCACGCCACGTCAGTTTCTGCGGTTCGCGTTCGAAGGTCGAGCATGGCAGTACAAGGTCCTCCCCTTCGGGCTCTCTCTGTCTCCGCGGGTCTTCACCAAACTCGCGGAGGGTGCCCTAGCGCCTCTGCGGCTTGCGGGCATCCGCGTACTCAATTATCTCGACAACTGGCTGATTTTAGCCCACTCTCGGGAGCAATTGACTGCGCACAGAGACGAGGTGCTCCGGCATCTCCGCCTATTGGGGTTGCAGGTCAACTGGGAAAAGAGCAAACTCGCCCCGGTGCAGAGGATCTCTTTTCTCGGGATGGAGCTGGACTCAGTCACCATGGTAGCGCGCCTCTCCGGAGAGCGCGCTCGCCTGCTGCTGAACTGTCTGAGGGAGCTCGACAGCAAATTAGTGGTCCCACTGAAATATTTTCAGAGGCTCCTGGGGCATATGGCTTCCGCTGCGGCTGTCATGCCGCTCAGGTTGCTCCATATGAGACCACTTCAGCTCTGGCTTCAAGATCAAGTTCCGAGACGCTTATGGCATGCAGGCACACACCGAGTCTCTGTTACTGCGCTGTGTCGCCGCACCCTCAGCCCCTGGAACGACCCCTCATTCCTGCAGGCCGGTGTGCCTCTGGGACAGACGTCCAGTCATGTTGTTGTTTCGACAGATGCTTCCAGCACAGGCTGGGGAGCCGTGTGTCACGGGCATGCAGCTGCGGGCCTGTGGGTAGGTGCCCAGCTGCATTGGCATATCAATCGCCTAGAGCTGTTGGCAGTGTTTCTTGCTCTCCGTATATCAACCGCATGGGGGGTATGCGCTCTTGCCGCATGTCTCAGCTCGCCCGCCGTCTGCTCCTCTGGAGTCACCCGCGGCTGAAGTCGCTGCGCACCATTCACATCCCAGGTATGCTCAACCATGCAGCCGATGTTCTCTCACGGCAGCAGATTCACTCTGGAGAATGGAGACTCCACCCCGAGTCTGTCCAGCTGATATGGGCGCGATTTGGGGAGGCCCAGATCGATCTGTTTGCTTCCCCCGAGAACGCTCATTGCCAGTTGTTTTACTCCCTGCAGGGGGCTCTTTCGGCACGGATGCACTGGCCCACAGCTGGCCTCGGGGCATACGCAAGTATGCGTTTCCCCCAGTGAGCCTGATCGCGCAGTTAATGTGCAAGGTCAGGGAGGACGAGGAACAGGTTCTGTTAGTTGTGCCCCTCTGGCCCAACCGGACCTGGATATCAGAGCTCTCCCTCCTCGCGACGGCCCTCCCATGGCAGATCCCTTTGAGAGAGGACCTACTTTCTCAGGGACAAGGCACCGTCTGGCACCCTCGTCCCGATCTCTGGAACCTCCACGTGTGATCCATAGACGCGAGGAAGACTTGGGTAACCTGCCGCCCGCGGTGGTTGATACCATCACCCAGGCTAGAGCCCCCTCTATGAGGCGCGCCTACGCCCTGAAGTGGAGTCTATTCACTGAGCGGTGTGTCTCTCGCAGAGAAGACCCCCGATCCTGCCAGATCAGTGTTGTGCTCTCTTTCCTTCAAGAGAAGCTGGACAGTAGGCTGTCGCCCTCCACTCTCAAGGTTTACGTTGCCGCCATCTCCGCTCACCATGACGCGGTGGCTGGCGGCACCGTGGGAAGGCATAACCTCATCATCCGGTTCCCCAGAGGCGCTAGGCGAATTAATCCAACTCGCCCCCCTCTCACGCCCTCTTGGGATCTCGCCCTCGTTCTCACGAGCCTGCAATTTGATCCCTTCGAGCCACTCGATACAGTATCTTTAAGATTTCTGTCCCTGAAGACAGCTCTGCTGGTCGCGTTTGCCTCCATGGAGGCATTTTCGGTCAGTGACTCGTGCCTGGAATTGGGTTATGTGCCCAAAGTTCCTACCACTCCCTTTAGAGATCAGGTAGTAACCCTGCAAGCGCTGCCCCCGGAGGAGGCAGACCCAGCCCTGTCCTTACTTTGTCCAGTTCGCGCTCTACGCATTTATGTGGACCGTACTCAGAACTTTAGATCTTCTGAGCAGCTCTTTGTCTGTTATGGTGGACGGCAGCAGGGAAGTGCCGTGTCTAAACAACGTTTATCCCACTGGATTGTGGAGGCCATTTCATGTGCCTATTTGAGCAGAGGTCAGCCGCGCCCCCCGGGAGTGCGTGCGCACTCCACTCGGAGCGTCGCATCCTCTTGGGCGTGTGCGCGCGGCGCTTCTTTAACAGACATTTGTAGAGCTGCGGGCTGGGCAACACCCAACACATTTGCAAGATTTTATAATCTGCGAGTGGAGCCGGTTTCCTCAAGGGTGTTAGGTACCTTTGGTGATTGAGGAAACAACTCGGTAGGTGTTGTACACGCTTGCGGTGCCTTTTTTCCCTAACACGGAGAGATGTGCACCCTCCTGTCTGTCAGTAAAGTTCCCCATTCGGTAAACCCTGCAGATTCCTCCGAGGCCCCCAGCACTGACTCAGCGGAGGAGTCACTTGCTGGCCCATTACGTTGTAGGTCTGCCCGCTGGTCAGCCCGCGTTTTGGGTATAGGTGCCTGCTATGGCCGATCCCCGCTGGTGATCCCCATATGCTTTTCCGCCACGGTTAAGTTCCCCCCCCTGGGTGGCACCGTGCTTTCCCTATCTGCTAACCACCTTCTTATGCGCACTCCCCCTTTTCAGGGTTAGTCCATATGTAATTCCATTTGTTCCCCTATTGGGTGCGGATGGTCTCCGCAGCGTCCTCCCTACTGGAATGGCACGCTTCCCAACGTACTGTCGTATATTCCTAGAATTATCTAGACGTTGGCGACTCCCAAAAAAATATACCTATTCCGTAAAACTTCTTTTTGAAGTGGGATAAGTTAGGGCCAAGGGCACGTTGGAGGACCGCGCCTCTCATGATCTGGGTGCGTCACGCTTGCCTGACCGCTCTCTCATGGTGGGTGTTGGTAAGGTGCAGTCATTATGGCGCTTTCAATGGGCTCCCATACATGGATTTAGAACATCAAGTCCACTTATAGTGCTGGAGTTCCCCCCGAAGGGGAACGTTCGAGGTTACTAAAGTAACCCTTCGTTCCCCGAGGAGGGGAACGGAAGCACTATACTCCGTCGCCATAATGACTGTCCCTTAGCTGTTAAAAGTCTCTTCAGCTTAAAAAGGATAGCGTCTGCTGGCACCAGGTGTGCTTATATACTCAGTTAATTGCATATGCTGCACACCTGCGCAGGCTTGCACTGCCAATTCATTCTTAATTGGCCCGTTCAATACTCTTTCAGACGAGTAGCTTCTGAACCGAATCTCCCATACACGGATTTAGAACATCAAATCCACTTATAGTGCTTCCGTTCCCCTCCTCTGGGAACGAAGGGTTACTTTAGTAACCTCGAACGTTCCATCACCATTTGCAATAGACATTTGCCACGCCTGACCCAATTTATCTGAAATGGGTTTGGTTTGTGATTAAAAAAGAGTTTCGTCTCCTACCATCACAACACAAACACGCTGGGTATGGAAATGAATCGAGACTGGGCAAATGGCACAAATTTATTAATATGACCAGTGATTTTTTTTATTACATTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGCCCCCCCCCTTTTTCTTTCTTATTTAAATAGTCTTATTTATTTTATTTTGGCTAGAATAAGAGCTGTTTTTAATTTTTGAAACAACATTTGAAGGACAAAATTATTAAGCTATATTTTTTTCGAAAGTCTTCAGTACAAACAATCGTTATACAATAACTTAGTTAATCTTGTTAACCTAGTTAAGCCGTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAGATATCTAGTCAAATATTACTTGCTGTCATCATGGCAAAAATAAATAAATCAGTTATTAGAAATAAGTTATTAAAACCTATGTTTATAAATGTGTTAAAAACCCGGCTCTCCGTTAAACAGAAATTGGGGAAAAAAATAAACAGGGGGTCTAATAATTCAGGGGGGCTAATAATTATGACTTTAACTGTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACACAGATACAGTTAAAGTCATAATTATTAGCTTATTATTAATTATAATTATATATACGGCCCACGGGCCAAAGTTGGCCAATAGTAACCTTTGATTTGGCCCTCCACACCATCTGAGAAGAGAGGGAGAATGATGGGAAATTTTGGGGGAATGCCTTTAACAGAGATTGTCATTTCTAATTTAACATAAGTTTTGTTTTTTAACCGTTGAGCTACAAAAAACAAACAAACAAACTGATATTAAGTGTTTTGATTAAATAAATCAGGTAAAAAAAAAAAAGTCACTTGATAAATAGAGGACATTATGCAAGCAAATTATACAAAAATGTATTATCATAATTTACATTTAAAGTATTTGAAATGTATTTAAAATGTAGTATTAATTGAATTATATAATAAATTATATAATAATAAATTAGAAGATTACATTGACAACAGTCTGGTTTATTTTTCTCTCACCACCTTCAGTAAAGTTTAGTTTTCGGCCCTTCATAAGAAAAAGTTATTTAAAAGTTATCACGCACGCAGTTGAAGTCAAAATTATTAGCTTTTTTATTATTCAAAAGATTAAGGATATTTTCACAGCATTTCCTATAATATTTTTTTCTCCTTGAGAAAGTACTTTTTTATTTTGACTAAAATAAAAGCCTTTTATTATTATTAAATTAATTTACTTTTTTTAAGGTTTGTTATTAGCCCCCTAAACAATTTTTTTTTCAATTGCCTACAGAACAAACCATTGCTTGTACAATGACTTGCCTAATTACCCCAATTAACCCATTTAAGCCTTTAAATTAAATCACACTTTAGCTGAATACTATCACCTTGAAAGATATCTAGTCAAATGTTATGTACTGTCATCATGGCAAAGATAAAAGTAATCAGTTATTAAAATGATTGTTTAGTAATTCTCTTCAATGAAATTCTCTTCAATAAAAAGAAATTGAGGAAAAATGTGAACAAATTAAAATTTAAAAGAAGGGCTAATAACTCTGACTTCAGCTTTATATATAAATATATGATCAAAATATTAATGCACATGTAAAAATACAAACACAGAGTCTCTGACTTTAACTGTGTGGTTTCAG
Seq C2 exon
GTTTCCTAATGCTTTTGCTGTGAACGCCTCCACATCAGGGGTGTCAGCAGGCCCTTCTCCCCTTTCCACTGGCACACAACCTGGGCCTTCATCACCCAGTCGTCCACCAAACCCCCCCAATGCGCTGGAGTCCAACACACTGAAGATTGAAGAGGTCAAGCCTCCTGCCACTGGCACCCGCAAGGCTAAAGTGCTGTATGACTACGATGCTGCAGATACAAGTGAACTTTCTCTTCTCGCAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470:ENSDART00000098172:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.651
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(0.1=0.0)
A:
NA
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]