DreINT0134434 @ danRer10
Intron Retention
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31057786-31058152:-
Coord C1 exon
chr5:31058052-31058152
Coord A exon
chr5:31057801-31058051
Coord C2 exon
chr5:31057786-31057800
Length
251 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGCTTTTTCTTTTCTCAGTGC
3' ss Score
9.94
Exon sequences
Seq C1 exon
GTAAACCACCTGCGCTGTCTGCATGAGTTTGTGGAGGCTCAGGCTGCTTATTACGCTCAGTGTCACAGGCACATGCAGGACCTTCAGAAAGAACTGAGCAG
Seq A exon
GTAAGAACTTCACTTAGGGATTTTTACATTAGTGATTTAGAAGTGGAGTTAGCACCAATTTGAAACCTTGCTTTTGAGTGTCATGTGCCTCATATTCATCATGTTCTCTGGACACACTTTGTTATGTAGGAGATGTTACAAAACATTTATGAGTAATAATGAGCACCTAATGACTGCTGTGTTTCTAGTAAAAAGCTTTTTCATATCAACTTCTTCATATCAGCTTTGTTTTCTGCTTTTTCTTTTCTCAG
Seq C2 exon
TGCAAACGGAGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470:ENSDART00000098172:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(13.4=100)
A:
NA
C2:
PF0311413=BAR=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]