MmuEX6101981 @ mm9
Exon Skipping
Gene
ENSMUSG00000051730 | Mettl5
Description
methyltransferase like 5 [Source:MGI Symbol;Acc:MGI:1922672]
Coordinates
chr2:69718824-69723672:-
Coord C1 exon
chr2:69723306-69723672
Coord A exon
chr2:69719354-69719468
Coord C2 exon
chr2:69718824-69719005
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTGTTTGGTTTTAGCAT
3' ss Score
9.17
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTACTTCCGGCACTGCGGGGAGGGACCGCGAGGACCAGCTAGAGGCATACGAGTGCTTTCCTGGAGCGTCTGGGTTCCACGGGCGGCGATCCCCGCGAGGCTCGTGGGATCCCCTCGCTGAGTCCTAAATAGTCTGTCCCCGACCCTCCACCCCACCCCCACCCTGCACCGCTGGGGAGTTTCGGGTTAGGTAGACTTCCCTGCAGCTCCCGTGCTGTGAAGCCCCAGGAGCCCAAACTTTAAAATACAGAGAAAACGATGAAGAAGTTAAAGCTTAAGGAACTAGAGAGTCGCCTGCAAGAAGTGGATGGATTCGAAAAGCCCAAGTTACTTCTAGAACAGTATCCCACCAGGCCGCACATTGCAG
Seq A exon
CATGCATGCTTTATACAATCCATAACACATACGATGACATTGAAAACAAAGCGGTTGCAGATCTAGGATGTGGCTGTGGAGTACTTAGCATCGGAGCGGCAATGCTAGGAGCAGG
Seq C2 exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCACTGGAAATATTTAATAAGAATGTGGAAGAGTTTGAGCTAACAAATGTTGATATGATTCAGTGTGATGTGTACTCATTATCTAACAGAATGTCCAAGTTATTTGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051730-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(1.6=5.4)
A:
PF051759=MTS=FE(30.4=100)
C2:
PF051759=MTS=FE(48.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAGACTTCCCTGCAGCTC
R:
AGCTCAAACTCTTCCACATTCT
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: